Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00798 ATGGCGGAGGAACACGAAGAACACTCATTCAAAACAATCGGTACTGCTTTCAGTTGGTTCATTGGGGACGATGATTCTGAAGATTTAGGTTCCGAGTGCGCTCTCAAGATCGAACCTAGTTTGCTCATTGACCTTCGTTGTTTAAAGATTGGTGAAGTTATTGGCGAAGGTTCATACTCCATTGTGTATGAAGGACTGTACGATTATCAGCCTGTTGCCGTGAAGATTATACAGCCGAGTAGGACATCGGCTATAAGTACTAAAAACAAAGAAAGATTTCTGAGAGAGGTTGCGTTGCTAGCAATAGTGAATCACGAGAACGTTATTCAGTTCATTGGTGCTGCCATAGCGCCGACGTTGATGATAATCACTGAGCTAATGAGAGGTGGATCACTCCAAAAGTACTTGTGGAGCATACGGCCGGAGACCCCAGAACTGAAGCTTTCCTTAAGTTTGGCTCTAGATCTATCACGAGTAATGGCATACTTACATTCAAATGGAGTCGTTCATCGCGACTTAAAGCCAAGCAATCTATTGCTAACAGAAGACAAGCAACGGATTAAACTAGCAGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTAAAATGACTACTGAGGCGGGTACTTACCGATGGATGGCCCCTGAGCTGTTAAGCATTGATCCATTGCCTGTTGGAGGTAGGAAATTTTATGATCACAAGGCAGATGTCTACAGCTTCTCGATAATTCTTTGGGAGTTGATGAGAAACAAGACTCCATTCAAGGGCAGAAACAATATAATGGTGGCATATGCCGCAGCTAAGAACATAAGACCAAGTCTTGAAGGAATCCCAGAAGATATCGCCCGTCTCTTGCAGTCATGCTGGGCTGAGGATCCAAAAATCCGTCCAGAATTTACACAAGTCATAGATTCTCTAAGGAATATTCTCCAAACTTTTTGA 942 43.31 MAEEHEEHSFKTIGTAFSWFIGDDDSEDLGSECALKIEPSLLIDLRCLKIGEVIGEGSYSIVYEGLYDYQPVAVKIIQPSRTSAISTKNKERFLREVALLAIVNHENVIQFIGAAIAPTLMIITELMRGGSLQKYLWSIRPETPELKLSLSLALDLSRVMAYLHSNGVVHRDLKPSNLLLTEDKQRIKLADFGLAREEISGKMTTEAGTYRWMAPELLSIDPLPVGGRKFYDHKADVYSFSIILWELMRNKTPFKGRNNIMVAYAAAKNIRPSLEGIPEDIARLLQSCWAEDPKIRPEFTQVIDSLRNILQTF 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6021387 6025598 + Cp4.1LG19g09520.1 Cpe19g00798 486206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00798 313 Pfam Protein tyrosine and serine/threonine kinase 48 306 IPR001245 GO:0004672|GO:0006468
Cpe19g00798 313 SMART serkin_6 48 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00798 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Cpe19g00798 313 PIRSF ILK 32 313 - -
Cpe19g00798 313 SUPERFAMILY Protein kinase-like (PK-like) 41 309 IPR011009 -
Cpe19g00798 313 CDD STKc_MAP3K-like 54 306 - -
Cpe19g00798 313 ProSitePatterns Protein kinases ATP-binding region signature. 54 75 IPR017441 GO:0005524
Cpe19g00798 313 PRINTS Tyrosine kinase catalytic domain signature 124 137 IPR001245 GO:0004672|GO:0006468
Cpe19g00798 313 PRINTS Tyrosine kinase catalytic domain signature 162 180 IPR001245 GO:0004672|GO:0006468
Cpe19g00798 313 PRINTS Tyrosine kinase catalytic domain signature 235 257 IPR001245 GO:0004672|GO:0006468
Cpe19g00798 313 PRINTS Tyrosine kinase catalytic domain signature 277 299 IPR001245 GO:0004672|GO:0006468
Cpe19g00798 313 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 24 311 - -
Cpe19g00798 313 PANTHER SERINE-THREONINE PROTEIN KINASE 24 311 - -
Cpe19g00798 313 Gene3D Phosphorylase Kinase; domain 1 38 128 - -
Cpe19g00798 313 ProSiteProfiles Protein kinase domain profile. 48 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00798 313 Gene3D Transferase(Phosphotransferase) domain 1 129 313 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00595 Cpe19g00798 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00870 Cpe-Chr18:7964351 Cpe19g00798 Cpe-Chr19:6021387 2.04E-56 dispersed
Cpe19g00798 Cpe-Chr19:6021387 Cpe04g00611 Cpe-Chr4:6366608 1.55E-63 dispersed
Cpe10g00595 Cpe-Chr10:3488252 Cpe19g00798 Cpe-Chr19:6021387 2.11E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63050 PF07714 PK_Tyr_Ser-Thr 7.70E-55 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00798 - - cmax:111496797 585.104