Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00800 ATGTTGTTGTGCGTACAGCTTGGGGTTGTATTACCCGTTTATTCCACCTTCAAGGCGATTGAGAAGAAAGATCAAAATGAGCAACAGAAGTGGCTTTTGTATTGGGCAGCCTATGGATCTTTCAGCCTTGTTGAAGTGTTCTCAGACAAAATTCTTTCATGGGTTCCAGTGTACTACCATCTGAAGTTTGCATTTCTTGTTTGGCTCCAGCTCCCAGCAACTGGTGGTGCAAAGAAAGTATACACGAACCACCTGCGTCCTTTCTTCCTTAAGCATCAAGCTAAGGTGGATCGAATTTTGGGGTCTGTTTATAATGAAATGGGGAAAACAATCAGTGCTCATCAAGCAGAGATTCAATATCTACGAACCATGATTATGCGAATAATGGGATCAGACGAGCAATCATCAAGGATTGGGCCAGCCAGACCAAATCAGGCTGGGAGTAACCTACAAATTGAAGATCAGACAAGACAAGACTCTGATACAGAATCCGATATCGACGATTGA 507 43.0 MLLCVQLGVVLPVYSTFKAIEKKDQNEQQKWLLYWAAYGSFSLVEVFSDKILSWVPVYYHLKFAFLVWLQLPATGGAKKVYTNHLRPFFLKHQAKVDRILGSVYNEMGKTISAHQAEIQYLRTMIMRIMGSDEQSSRIGPARPNQAGSNLQIEDQTRQDSDTESDIDD 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6030078 6034521 - Cp4.1LG19g09360.1 Cpe19g00800 486208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00800 168 MobiDBLite consensus disorder prediction 133 168 - -
Cpe19g00800 168 PANTHER HVA22-LIKE PROTEIN K 4 165 - -
Cpe19g00800 168 MobiDBLite consensus disorder prediction 137 155 - -
Cpe19g00800 168 Pfam TB2/DP1, HVA22 family 12 88 IPR004345 -
Cpe19g00800 168 PANTHER HVA22-LIKE PROTEINS 4 165 IPR004345 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00800 K17279 REEP5_6; receptor expression-enhancing protein 5/6 - csv:101217367 254.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00249 Cpe-Chr11:1350907 Cpe19g00800 Cpe-Chr19:6030078 2.87E-14 dispersed
Cpe16g00733 Cpe-Chr16:7425035 Cpe19g00800 Cpe-Chr19:6030078 4.45E-12 dispersed
Cpe18g00917 Cpe-Chr18:8160632 Cpe19g00800 Cpe-Chr19:6030078 5.61E-14 dispersed
Cpe10g00597 Cpe-Chr10:3495694 Cpe19g00800 Cpe-Chr19:6030078 5.02E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g932 . . . . . . . Bma15g01006 . . . Cma07g00502 . Car07g00438 Sed14g1099 Cpe19g00800 . Bhi03g01274 Tan03g1961 Cmetu08g1175 . Hepe04g1492 . . Cla01g01890 Cam01g1980 Cec04g1632 Cco04g1698 Clacu01g2000 Cmu01g1871 Cre04g1552 . . Cone6ag1608 Cone9ag1534 Lsi01g00695 . . Cme08g00829 . Blo06g00127 . . Bpe10g00108 . . . . . Cmo07g00501 . . . . . . . . . . . . . . . . . . . . . Csa06g03223 Chy02g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010735 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00800 Cpe_Chr19 FPKM 5.925839 6.301681 15.950359 18.321352 8.067741 7.154247 8.155816 9.760406 9.549393 10.227154