Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe19g00801 | ATGTCGGCCGATGTAGAAGATTCGTCTATAGCTTCCATAGAGGGTAGCGTTTCTTCTCCTGGAGCGAAATCTGCTACTAAGAAGAAGCGAAATCTACCCGGAATGCCAGATCCGGAGGCGGAAGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCCACGAATCGATTTGTTTGCGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTACAGCTTCACCGGCGAGGACACAATCTTCCATGGAAGCTCCGGCAGAGGTCAAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGAGTTCATGTGTTCATCACGATCCCTCTAGAGCTCTTGGTGATCTGACTGGGATTAAAAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAATGGAAATGCGGTAAGTGTTCTAAGAAATACGCCGTTCAGTCCGATTGGAAAGCTCACTCCAAAATTTGTGGCACTCGCGAGTATAAATGCGATTGTGGGACTTTGTTTAACAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCGGAGGAAAGGGCAAAAGCTCAGCTTAAGCCGGTGGACAAACCGGATTTGGATCCAGACATAGGCGATTCTCAGACGACGGTGGCGAAACCCAATCCGGAGCCTTCTCCACCATCGCCGCCACCGCCTTCATCTCCTCCGCAGTCAACGGCTGAGCCAACAACTGTGCTGCCTGTCCCAAGTCAAGCTGGGGGCAGCCCCAACAGTGGCCTGGCTGCACTAATAACCTCAGTAGGCAGCAGCGTGGACGTTGCAACAACCGCTCAATCATACCCAGGCGGCGGCGGCGGCGACATATCCGGCCGACAGGACATGAACAGAAGCAACTGA | 879 | 51.65 | MSADVEDSSIASIEGSVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCGKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFNRRDSFITHRAFCDALAEERAKAQLKPVDKPDLDPDIGDSQTTVAKPNPEPSPPSPPPPSSPPQSTAEPTTVLPVPSQAGGSPNSGLAALITSVGSSVDVATTAQSYPGGGGGDISGRQDMNRSN | 292 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 6035762 | 6039242 | - | Cp4.1LG19g09410.1 | Cpe19g00801 | 486209 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe19g00801 | 292 | SMART | c2h2final6 | 97 | 127 | IPR013087 | - | |
Cpe19g00801 | 292 | SMART | c2h2final6 | 132 | 152 | IPR013087 | - | |
Cpe19g00801 | 292 | SMART | c2h2final6 | 56 | 78 | IPR013087 | - | |
Cpe19g00801 | 292 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cpe19g00801 | 292 | MobiDBLite | consensus disorder prediction | 191 | 255 | - | - | |
Cpe19g00801 | 292 | Gene3D | Classic Zinc Finger | 35 | 107 | - | - | |
Cpe19g00801 | 292 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 7 | 20 | 193 | - | - | |
Cpe19g00801 | 292 | MobiDBLite | consensus disorder prediction | 269 | 292 | - | - | |
Cpe19g00801 | 292 | Pfam | Zinc-finger double-stranded RNA-binding | 56 | 78 | IPR022755 | - | |
Cpe19g00801 | 292 | MobiDBLite | consensus disorder prediction | 214 | 232 | - | - | |
Cpe19g00801 | 292 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 20 | 193 | - | - | |
Cpe19g00801 | 292 | MobiDBLite | consensus disorder prediction | 233 | 255 | - | - | |
Cpe19g00801 | 292 | Gene3D | Classic Zinc Finger | 108 | 190 | - | - | |
Cpe19g00801 | 292 | SUPERFAMILY | beta-beta-alpha zinc fingers | 55 | 152 | IPR036236 | - | |
Cpe19g00801 | 292 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 58 | 78 | IPR013087 | - | |
Cpe19g00801 | 292 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Cpe19g00801 | 292 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 56 | 78 | IPR013087 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe14g00555 | Cpe19g00801 | CCT | |
Cpe14g00555 | Cpe19g00801 | ECH | |
Cpe10g00600 | Cpe19g00801 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe19g00801 | Cpe-Chr19:6035762 | Cpe19g00802 | Cpe-Chr19:6041014 | 5.97E-129 | tandem | |
Cpe10g00598 | Cpe-Chr10:3500010 | Cpe19g00801 | Cpe-Chr19:6035762 | 2.13E-138 | wgd | |
Cpe14g00555 | Cpe-Chr14:3522231 | Cpe19g00801 | Cpe-Chr19:6035762 | 4.78E-118 | wgd | |
Cpe19g00801 | Cpe-Chr19:6035762 | Cpe02g00139 | Cpe-Chr2:691915 | 4.21E-107 | wgd | |
Cpe19g00801 | Cpe-Chr19:6035762 | Cpe07g00434 | Cpe-Chr7:2791390 | 5.33E-108 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51027 | PF12171 | zf-C2H2_jaz | 7.70E-05 | CL0361 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe19g00801 | K25869 | - | mnt:21392400 | 358.607 |