Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00801 ATGTCGGCCGATGTAGAAGATTCGTCTATAGCTTCCATAGAGGGTAGCGTTTCTTCTCCTGGAGCGAAATCTGCTACTAAGAAGAAGCGAAATCTACCCGGAATGCCAGATCCGGAGGCGGAAGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCCACGAATCGATTTGTTTGCGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTACAGCTTCACCGGCGAGGACACAATCTTCCATGGAAGCTCCGGCAGAGGTCAAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGAGTTCATGTGTTCATCACGATCCCTCTAGAGCTCTTGGTGATCTGACTGGGATTAAAAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAATGGAAATGCGGTAAGTGTTCTAAGAAATACGCCGTTCAGTCCGATTGGAAAGCTCACTCCAAAATTTGTGGCACTCGCGAGTATAAATGCGATTGTGGGACTTTGTTTAACAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCGGAGGAAAGGGCAAAAGCTCAGCTTAAGCCGGTGGACAAACCGGATTTGGATCCAGACATAGGCGATTCTCAGACGACGGTGGCGAAACCCAATCCGGAGCCTTCTCCACCATCGCCGCCACCGCCTTCATCTCCTCCGCAGTCAACGGCTGAGCCAACAACTGTGCTGCCTGTCCCAAGTCAAGCTGGGGGCAGCCCCAACAGTGGCCTGGCTGCACTAATAACCTCAGTAGGCAGCAGCGTGGACGTTGCAACAACCGCTCAATCATACCCAGGCGGCGGCGGCGGCGACATATCCGGCCGACAGGACATGAACAGAAGCAACTGA 879 51.65 MSADVEDSSIASIEGSVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCGKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFNRRDSFITHRAFCDALAEERAKAQLKPVDKPDLDPDIGDSQTTVAKPNPEPSPPSPPPPSSPPQSTAEPTTVLPVPSQAGGSPNSGLAALITSVGSSVDVATTAQSYPGGGGGDISGRQDMNRSN 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6035762 6039242 - Cp4.1LG19g09410.1 Cpe19g00801 486209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00801 292 SMART c2h2final6 97 127 IPR013087 -
Cpe19g00801 292 SMART c2h2final6 132 152 IPR013087 -
Cpe19g00801 292 SMART c2h2final6 56 78 IPR013087 -
Cpe19g00801 292 MobiDBLite consensus disorder prediction 1 25 - -
Cpe19g00801 292 MobiDBLite consensus disorder prediction 191 255 - -
Cpe19g00801 292 Gene3D Classic Zinc Finger 35 107 - -
Cpe19g00801 292 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 20 193 - -
Cpe19g00801 292 MobiDBLite consensus disorder prediction 269 292 - -
Cpe19g00801 292 Pfam Zinc-finger double-stranded RNA-binding 56 78 IPR022755 -
Cpe19g00801 292 MobiDBLite consensus disorder prediction 214 232 - -
Cpe19g00801 292 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 193 - -
Cpe19g00801 292 MobiDBLite consensus disorder prediction 233 255 - -
Cpe19g00801 292 Gene3D Classic Zinc Finger 108 190 - -
Cpe19g00801 292 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cpe19g00801 292 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cpe19g00801 292 MobiDBLite consensus disorder prediction 1 39 - -
Cpe19g00801 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe14g00555 Cpe19g00801 CCT
Cpe14g00555 Cpe19g00801 ECH
Cpe10g00600 Cpe19g00801 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00801 Cpe-Chr19:6035762 Cpe19g00802 Cpe-Chr19:6041014 5.97E-129 tandem
Cpe10g00598 Cpe-Chr10:3500010 Cpe19g00801 Cpe-Chr19:6035762 2.13E-138 wgd
Cpe14g00555 Cpe-Chr14:3522231 Cpe19g00801 Cpe-Chr19:6035762 4.78E-118 wgd
Cpe19g00801 Cpe-Chr19:6035762 Cpe02g00139 Cpe-Chr2:691915 4.21E-107 wgd
Cpe19g00801 Cpe-Chr19:6035762 Cpe07g00434 Cpe-Chr7:2791390 5.33E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51027 PF12171 zf-C2H2_jaz 7.70E-05 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00801 K25869 - mnt:21392400 358.607