Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00802 ATGCCGGTCGATTTCGACAGTTCCTCACCGGCTTCCGGCGAACCCACAGTCTCCACCCCCGGAAACTCCGCCGTAAGGAAAAAGCGAAATCTCCCTGGAATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGACCCTTTTGGCCACGAATCGATTTGTTTGCGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGACACAATCTTCCATGGAATCTCCGGAGGAGGTCAAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGAGTTCATGTGTTCATCACGATCCCTCTAGAGCTCTTGGTGATCTGACTGGGATTAAAAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAATGGAAATGCGGTAAGTGTTCTAAGAACTACGCCGTTCAGTCCGATTGCAAAGCTCACTCCAAAATCTGTGCCACTCGCGAGTATAAATGCGATTGTGGGGCTTTGTTTAACAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGTATTGGCGGAGGAAAGGGCAAGAGCTCTGCTTAAACCGGTGGGGAAACCGAATCCGGAGCCTTCTCCGCCGCCTCCACCATCGCCGCCGCCTCCATCTCCTCCGCAGTCAACTGGTGAGCCAACAACTGTGTTGGCTGTTCCAAGTCAAGACCTAATGCAAGCCATGGCTTGTTCAGATCGCTCACCAGACTATGCACCATCTTCAACCATTGAGCCTATTTCTCTATGTCTTGCAATGAATCAAGGGCCCCAGATGTTTGGAACTGCTAGCCAAGACCACCGACCGTACTTACCAATGCCACACCCTGCAATGTCCGCCACAGCATTACTCCAAAAAGCTGCTCAAGTGGGCGCCGCAGCATCAAATGCCTCGTTGCTTCGTGGCTTAGGCTTAGTGTCATCTTCCTCTGCAGCTGCCCAGCAAGAGAGCTTGGCATGGAACCACCAGAGGCGAGTCGAACCAGATGGCGTGTCGATCGCTGCAGGGCTCGGCCTCGGACTCCCCTATGATGGGAACTCGGGATTGAAGGAACTAATAAGGGGAAACCATTCCATGTTTGCTCCAAAACACACCACCCTTGATTTCCTTGGATTGGGAATGGCAGCTGGTGGCAGCCCCAACAGCGGCCTGGCCGCACTAATCACATCAATAGGCGACGTTACAGCCACAACCACCGGATCATACGGAGCTACTGACATATCCACCATAGACATGAACACAAACCATTGA 1272 52.04 MPVDFDSSSPASGEPTVSTPGNSAVRKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWNLRRRSSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCGKCSKNYAVQSDCKAHSKICATREYKCDCGALFNRRDSFITHRAFCDVLAEERARALLKPVGKPNPEPSPPPPPSPPPPSPPQSTGEPTTVLAVPSQDLMQAMACSDRSPDYAPSSTIEPISLCLAMNQGPQMFGTASQDHRPYLPMPHPAMSATALLQKAAQVGAAASNASLLRGLGLVSSSSAAAQQESLAWNHQRRVEPDGVSIAAGLGLGLPYDGNSGLKELIRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSIGDVTATTTGSYGATDISTIDMNTNH 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6041014 6042974 - Cp4.1LG19g09420.1 Cpe19g00802 486210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00802 423 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 255 422 - -
Cpe19g00802 423 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 9 234 - -
Cpe19g00802 423 SUPERFAMILY beta-beta-alpha zinc fingers 54 151 IPR036236 -
Cpe19g00802 423 Gene3D Classic Zinc Finger 53 152 - -
Cpe19g00802 423 MobiDBLite consensus disorder prediction 1 37 - -
Cpe19g00802 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Cpe19g00802 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 234 - -
Cpe19g00802 423 SMART c2h2final6 96 126 IPR013087 -
Cpe19g00802 423 SMART c2h2final6 55 77 IPR013087 -
Cpe19g00802 423 MobiDBLite consensus disorder prediction 196 218 - -
Cpe19g00802 423 MobiDBLite consensus disorder prediction 193 223 - -
Cpe19g00802 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 255 422 - -
Cpe19g00802 423 MobiDBLite consensus disorder prediction 9 25 - -
Cpe19g00802 423 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00555 Cpe-Chr14:3522231 Cpe19g00802 Cpe-Chr19:6041014 1.26E-19 dispersed
Cpe19g00802 Cpe-Chr19:6041014 Cpe03g01066 Cpe-Chr3:8815274 1.32E-104 dispersed
Cpe19g00801 Cpe-Chr19:6035762 Cpe19g00802 Cpe-Chr19:6041014 5.97E-129 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51028 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00802 K25869 - csv:101217597 529.635