Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00812 ATGGAGATGAGAGGTGAAGATGAGGAAATAGGAACTCCTTCCCCTTTGTGCTATCAATCAAATACGGAATCTTCAACCAAACTGCCTAATTCTGATCATACACATCTAACACCAGCTGATACCAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCAACTGAATCAAAACCATCACAAACTGAGTCTGCATCAGTATTTACACAAACACACAACAGACCATCCTGTAGCAACCCCAGATCCAGTCCAGACCTCCGTTACTGCCTCACCCTCTGCAGATACTCAGCCGATCGCAAGCAGCAGATCAATCTCAAGAACACCACCTGCAAGTAATAATGTTATTCCTTCAGTTCGGTATCGAGAATGTTTGAAGAACCACGCAGCGAGTACTGGAGGCCATGTTCTCGATGGTTGTGGCGAGTTCATGCCTGGTGGAGAAACTGGAACGCCCGAGGCCTTGAAGTGTGCAGCCTGTGAATGCCATCGGAACTTTCACCGGAAAGAGGTGAAAGATCACGAGCCCACACAGCTAGCTGTACCCAGTGGTTTTTTCATCTCCAACACCATCAGAAACAATGGCCATCGCACTGATAGGTCACCAGTTCCACTCTCCCGCCACCATCAATTGCCGGCAGTTCCAATTTCTTCGATGATGGCATTTGGAGGAAGCAATGGAGCTCCGGACGAGTCTTCAAGTGAAGATCTAAACATGTTTCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCAACAATTAATGAAAAAACGATTTAGAACAAAGTTCACACAGGGACAGAAGGACAAGATGGAAGAGTTTGCTGAAAAACTGGGGTGGAGAATTCAGAAACACGATGAATTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAACGTAA 972 46.91 MEMRGEDEEIGTPSPLCYQSNTESSTKLPNSDHTHLTPADTRRDHTVPQLHFSHQLNQNHHKLSLHQYLHKHTTDHPVATPDPVQTSVTASPSADTQPIASSRSISRTPPASNNVIPSVRYRECLKNHAASTGGHVLDGCGEFMPGGETGTPEALKCAACECHRNFHRKEVKDHEPTQLAVPSGFFISNTIRNNGHRTDRSPVPLSRHHQLPAVPISSMMAFGGSNGAPDESSSEDLNMFHQSNNGARDLFGQQQQLMKKRFRTKFTQGQKDKMEEFAEKLGWRIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQT 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6085016 6085987 + Cp4.1LG19g09350.1 Cpe19g00812 486220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00812 323 MobiDBLite consensus disorder prediction 14 35 - -
Cpe19g00812 323 MobiDBLite consensus disorder prediction 1 41 - -
Cpe19g00812 323 MobiDBLite consensus disorder prediction 79 115 - -
Cpe19g00812 323 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 121 170 IPR006456 -
Cpe19g00812 323 SUPERFAMILY Homeodomain-like 256 320 IPR009057 -
Cpe19g00812 323 Pfam ZF-HD protein dimerisation region 119 171 IPR006456 -
Cpe19g00812 323 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 321 - -
Cpe19g00812 323 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 55 321 - -
Cpe19g00812 323 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 120 171 IPR006456 -
Cpe19g00812 323 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 259 316 IPR006455 -
Cpe19g00812 323 MobiDBLite consensus disorder prediction 74 115 - -
Cpe19g00812 323 Gene3D - 247 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00812 - - - csv:101220687 501.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00617 Cpe19g00812 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02393 Cpe-Chr1:19990686 Cpe19g00812 Cpe-Chr19:6085016 3.43E-22 dispersed
Cpe10g00542 Cpe-Chr10:3189658 Cpe19g00812 Cpe-Chr19:6085016 2.26E-58 dispersed
Cpe13g00948 Cpe-Chr13:7974800 Cpe19g00812 Cpe-Chr19:6085016 4.27E-23 dispersed
Cpe19g00746 Cpe-Chr19:5752708 Cpe19g00812 Cpe-Chr19:6085016 2.12E-59 dispersed
Cpe19g00812 Cpe-Chr19:6085016 Cpe11g00465 Cpe-Chr11:2623784 2.69E-54 dispersed
Cpe10g00617 Cpe-Chr10:3583021 Cpe19g00812 Cpe-Chr19:6085016 1.78E-121 wgd
Cpe11g00204 Cpe-Chr11:1107091 Cpe19g00812 Cpe-Chr19:6085016 1.36E-68 wgd
Cpe14g00529 Cpe-Chr14:3339623 Cpe19g00812 Cpe-Chr19:6085016 1.33E-32 wgd
Cpe19g00812 Cpe-Chr19:6085016 Cpe07g00420 Cpe-Chr7:2710667 6.13E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe11g00465 . 50 233 ZF-HD Transcription Factor Family AT4G24660 55.6 2.7e-52 202.6
Cpe07g00420 . 99 309 ZF-HD Transcription Factor Family AT4G24660 50.7 2.4e-48 189.5
Cpe19g00746 . 48 244 ZF-HD Transcription Factor Family AT4G24660 51.8 3.1e-48 189.1
Cpe01g00763 . 59 223 ZF-HD Transcription Factor Family AT4G24660 54.7 9.0e-48 187.6
Cpe01g01712 . 82 281 ZF-HD Transcription Factor Family AT2G02540 54.4 4.0e-51 199.1
Cpe08g01331 . 70 264 ZF-HD Transcription Factor Family AT2G02540 51.2 4.1e-48 189.1
Cpe01g01712 . 79 284 ZF-HD Transcription Factor Family AT1G14440 55.2 3.2e-56 216.1
Cpe08g01331 . 67 264 ZF-HD Transcription Factor Family AT1G14440 54.3 2.5e-53 206.5
Cpe19g00812 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.8e-52 203.4
Cpe03g00513 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 1.9e-49 193.4
Cpe13g00949 . 9 247 ZF-HD Transcription Factor Family AT5G15210 54.3 4.3e-49 192.2
Cpe04g00062 . 13 284 ZF-HD Transcription Factor Family AT5G15210 50.2 8.3e-45 177.9
Cpe03g00513 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.4 4.9e-57 218.8
Cpe01g02394 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 2.4e-56 216.5
Cpe13g00949 . 18 249 ZF-HD Transcription Factor Family AT3G28920 58.3 4.6e-55 212.2
Cpe04g00062 . 23 250 ZF-HD Transcription Factor Family AT3G28920 62.9 5.6e-53 205.3
Cpe01g02394 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 1.9e-51 200.3
Cpe03g00513 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 6.2e-50 195.3
Cpe13g00949 . 26 253 ZF-HD Transcription Factor Family AT5G39760 56.2 8.1e-50 194.9
Cpe04g00062 . 31 259 ZF-HD Transcription Factor Family AT5G39760 64.5 5.3e-49 192.2
Cpe01g02394 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 1.3e-49 193.7
Cpe09g00178 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 3.2e-48 189.1
Cpe13g00949 . 59 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-48 187.6
Cpe03g00513 . 58 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.7e-45 177.6
Cpe01g01712 . 82 281 ZF-HD Transcription Factor Family AT2G02540 54.4 4.0e-51 199.1
Cpe08g01331 . 70 264 ZF-HD Transcription Factor Family AT2G02540 51.2 4.1e-48 189.1
Cpe11g00465 . 50 233 ZF-HD Transcription Factor Family AT4G24660 55.6 2.7e-52 202.6
Cpe07g00420 . 99 309 ZF-HD Transcription Factor Family AT4G24660 50.7 2.4e-48 189.5
Cpe19g00746 . 48 244 ZF-HD Transcription Factor Family AT4G24660 51.8 3.1e-48 189.1
Cpe01g00763 . 59 223 ZF-HD Transcription Factor Family AT4G24660 54.7 9.0e-48 187.6
Cpe01g02394 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 1.9e-51 200.3
Cpe03g00513 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 6.2e-50 195.3
Cpe13g00949 . 26 253 ZF-HD Transcription Factor Family AT5G39760 56.2 8.1e-50 194.9
Cpe04g00062 . 31 259 ZF-HD Transcription Factor Family AT5G39760 64.5 5.3e-49 192.2
Cpe19g00812 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.8e-52 203.4
Cpe01g02394 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 1.3e-49 193.7
Cpe09g00178 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 3.2e-48 189.1
Cpe13g00949 . 59 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-48 187.6
Cpe03g00513 . 58 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.7e-45 177.6
Cpe03g00513 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 1.9e-49 193.4
Cpe13g00949 . 9 247 ZF-HD Transcription Factor Family AT5G15210 54.3 4.3e-49 192.2
Cpe04g00062 . 13 284 ZF-HD Transcription Factor Family AT5G15210 50.2 8.3e-45 177.9
Cpe01g01712 . 79 284 ZF-HD Transcription Factor Family AT1G14440 55.2 3.2e-56 216.1
Cpe08g01331 . 67 264 ZF-HD Transcription Factor Family AT1G14440 54.3 2.5e-53 206.5
Cpe03g00513 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.4 4.9e-57 218.8
Cpe01g02394 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 2.4e-56 216.5
Cpe13g00949 . 18 249 ZF-HD Transcription Factor Family AT3G28920 58.3 4.6e-55 212.2
Cpe04g00062 . 23 250 ZF-HD Transcription Factor Family AT3G28920 62.9 5.6e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51031 PF04770 ZF-HD_dimer 1.90E-30 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00812 Cpe_Chr19 FPKM 0.0 0.0 0.0 0.0 1.031659 1.015288 0.0 1.112603 0.415639 0.0