Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00812 ATGGAGATGAGAGGTGAAGATGAGGAAATAGGAACTCCTTCCCCTTTGTGCTATCAATCAAATACGGAATCTTCAACCAAACTGCCTAATTCTGATCATACACATCTAACACCAGCTGATACCAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCAACTGAATCAAAACCATCACAAACTGAGTCTGCATCAGTATTTACACAAACACACAACAGACCATCCTGTAGCAACCCCAGATCCAGTCCAGACCTCCGTTACTGCCTCACCCTCTGCAGATACTCAGCCGATCGCAAGCAGCAGATCAATCTCAAGAACACCACCTGCAAGTAATAATGTTATTCCTTCAGTTCGGTATCGAGAATGTTTGAAGAACCACGCAGCGAGTACTGGAGGCCATGTTCTCGATGGTTGTGGCGAGTTCATGCCTGGTGGAGAAACTGGAACGCCCGAGGCCTTGAAGTGTGCAGCCTGTGAATGCCATCGGAACTTTCACCGGAAAGAGGTGAAAGATCACGAGCCCACACAGCTAGCTGTACCCAGTGGTTTTTTCATCTCCAACACCATCAGAAACAATGGCCATCGCACTGATAGGTCACCAGTTCCACTCTCCCGCCACCATCAATTGCCGGCAGTTCCAATTTCTTCGATGATGGCATTTGGAGGAAGCAATGGAGCTCCGGACGAGTCTTCAAGTGAAGATCTAAACATGTTTCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCAACAATTAATGAAAAAACGATTTAGAACAAAGTTCACACAGGGACAGAAGGACAAGATGGAAGAGTTTGCTGAAAAACTGGGGTGGAGAATTCAGAAACACGATGAATTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAACGTAA 972 46.91 MEMRGEDEEIGTPSPLCYQSNTESSTKLPNSDHTHLTPADTRRDHTVPQLHFSHQLNQNHHKLSLHQYLHKHTTDHPVATPDPVQTSVTASPSADTQPIASSRSISRTPPASNNVIPSVRYRECLKNHAASTGGHVLDGCGEFMPGGETGTPEALKCAACECHRNFHRKEVKDHEPTQLAVPSGFFISNTIRNNGHRTDRSPVPLSRHHQLPAVPISSMMAFGGSNGAPDESSSEDLNMFHQSNNGARDLFGQQQQLMKKRFRTKFTQGQKDKMEEFAEKLGWRIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQT 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6085016 6085987 + Cp4.1LG19g09350.1 Cpe19g00812 486220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00812 323 MobiDBLite consensus disorder prediction 14 35 - -
Cpe19g00812 323 MobiDBLite consensus disorder prediction 1 41 - -
Cpe19g00812 323 MobiDBLite consensus disorder prediction 79 115 - -
Cpe19g00812 323 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 121 170 IPR006456 -
Cpe19g00812 323 SUPERFAMILY Homeodomain-like 256 320 IPR009057 -
Cpe19g00812 323 Pfam ZF-HD protein dimerisation region 119 171 IPR006456 -
Cpe19g00812 323 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 321 - -
Cpe19g00812 323 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 55 321 - -
Cpe19g00812 323 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 120 171 IPR006456 -
Cpe19g00812 323 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 259 316 IPR006455 -
Cpe19g00812 323 MobiDBLite consensus disorder prediction 74 115 - -
Cpe19g00812 323 Gene3D - 247 320 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00617 Cpe19g00812 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02393 Cpe-Chr1:19990686 Cpe19g00812 Cpe-Chr19:6085016 3.43E-22 dispersed
Cpe10g00542 Cpe-Chr10:3189658 Cpe19g00812 Cpe-Chr19:6085016 2.26E-58 dispersed
Cpe13g00948 Cpe-Chr13:7974800 Cpe19g00812 Cpe-Chr19:6085016 4.27E-23 dispersed
Cpe19g00746 Cpe-Chr19:5752708 Cpe19g00812 Cpe-Chr19:6085016 2.12E-59 dispersed
Cpe19g00812 Cpe-Chr19:6085016 Cpe11g00465 Cpe-Chr11:2623784 2.69E-54 dispersed
Cpe10g00617 Cpe-Chr10:3583021 Cpe19g00812 Cpe-Chr19:6085016 1.78E-121 wgd
Cpe11g00204 Cpe-Chr11:1107091 Cpe19g00812 Cpe-Chr19:6085016 1.36E-68 wgd
Cpe14g00529 Cpe-Chr14:3339623 Cpe19g00812 Cpe-Chr19:6085016 1.33E-32 wgd
Cpe19g00812 Cpe-Chr19:6085016 Cpe07g00420 Cpe-Chr7:2710667 6.13E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51031 PF04770 ZF-HD_dimer 1.90E-30 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00812 - - csv:101220687 501.13