Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00814 ATGTCCTTCAAAAGCTTTTTTCGCGAGCTATGGGAAATCAAAGACGGACTTGCAATCAAACCGAAGCGAGGGGGAGAAGGAAGGAACTGGCGAAGTCGAACCAGGTCACATATTGCACCTGATGAAGTGCTTCCTCAGCCTGAAGCAGTTCAGCAAGGCCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATTCGAAGAGTAGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGCTGTCTTGTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACGAAGGAAGTTGTCAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCCCCAATTCAATGCTATGTTAGAAGGCACCGAGCATCTTCGACCTATCGTCTATACTCCGGATTGGTGCCTTGTAGTATTATTGAATTGACAGCGGAGAATGAAAGTGATAAACTTTTATTAGCAGCTAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTTATATCACTGGTAGCTGATGATTTTTCCTGGACCTGCAATACCTATGTAGGCAAATTAAGGCAAGCGTCCAACTTCTTTGGCACAAAGTTCACCATGTATGATACTCAACCGCCAGTTCTCCCTGTAGTGCAACAGAATAATCAATCAAATCGTTCATTTCATGCTAAGCAAGTCTCTCCAAGAATGTCAGCTTTTAACTACACTATAGGGGCAATCTCTTATGAGCTTAATGTTCTACGCACTAGAGGGCCTAGAAGAATGCACTGTGCCATGCACTCAATCCCTGTATCTTGCATTCAACAGGGAGGAAATGCACCGACACCGACGTCATTCACGGCCTGTGTCGATGACCAATGCTCTCCTCTACCAGCTTCTAAAGGAAAGGAGCCAGAGACAGATGCAAGTTCCACATGCATCCAGGGTGCACAGGTTCAAGATTTGGGAGAATCCTTGGTTCTTAAGAACAAGGCTCCTAGATGGCATGAACAGCTTCGATGCTGGTGCTTGAACTTCAGAGGACGTGTGACAGTGGCTTCTGTAAAAAACTTTCAACTCGTGGTCGATGTAGATCCCGCACTCAACGTGTCGGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGGAAAATTGGAACGGACATCTTCACAATGGATTATCGCTACCCGCTCTCCGCCTTCCAAGCCTTCGCAATCTGCTTGAGTAGCTTCGACACCAAACCAGCATGTGAATAA 1266 46.05 MSFKSFFRELWEIKDGLAIKPKRGGEGRNWRSRTRSHIAPDEVLPQPEAVQQGQWANLPPELLLDIIRRVEESETSWPARTAVLFCASVCKSWRNITKEVVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRASSTYRLYSGLVPCSIIELTAENESDKLLLAAKRVRRATGTDFVISLVADDFSWTCNTYVGKLRQASNFFGTKFTMYDTQPPVLPVVQQNNQSNRSFHAKQVSPRMSAFNYTIGAISYELNVLRTRGPRRMHCAMHSIPVSCIQQGGNAPTPTSFTACVDDQCSPLPASKGKEPETDASSTCIQGAQVQDLGESLVLKNKAPRWHEQLRCWCLNFRGRVTVASVKNFQLVVDVDPALNVSVEEQEKIILQFGKIGTDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6094376 6097185 - Cp4.1LG19g09210.1 Cpe19g00814 486222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00814 421 Gene3D - 48 101 - -
Cpe19g00814 421 Gene3D Tubby Protein; Chain A 113 421 IPR025659 -
Cpe19g00814 421 ProSitePatterns Tub family signature 2. 406 421 IPR018066 -
Cpe19g00814 421 SUPERFAMILY Tubby C-terminal domain-like 104 421 IPR025659 -
Cpe19g00814 421 Pfam Tub family 116 416 IPR000007 -
Cpe19g00814 421 PANTHER TUBBY-RELATED 1 421 - -
Cpe19g00814 421 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Cpe19g00814 421 PRINTS Tubby superfamily signature 244 271 IPR000007 -
Cpe19g00814 421 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Cpe19g00814 421 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Cpe19g00814 421 PRINTS Tubby superfamily signature 399 421 IPR000007 -
Cpe19g00814 421 PRINTS Tubby superfamily signature 177 193 IPR000007 -
Cpe19g00814 421 PRINTS Tubby superfamily signature 195 219 IPR000007 -
Cpe19g00814 421 PRINTS Tubby superfamily signature 378 397 IPR000007 -
Cpe19g00814 421 Pfam F-box domain 55 101 IPR001810 GO:0005515
Cpe19g00814 421 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Cpe19g00814 421 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00814 Cpe-Chr19:6094376 Cpe14g00302 Cpe-Chr14:1776558 1.19E-145 dispersed
Cpe01g00695 Cpe-Chr1:4029886 Cpe19g00814 Cpe-Chr19:6094376 0 wgd
Cpe14g00525 Cpe-Chr14:3322335 Cpe19g00814 Cpe-Chr19:6094376 0 wgd
Cpe19g00814 Cpe-Chr19:6094376 Cpe02g00120 Cpe-Chr2:604113 3.61E-179 wgd
Cpe19g00814 Cpe-Chr19:6094376 Cpe06g00104 Cpe-Chr6:513960 4.28E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51032 PF01167 Tub 5.70E-98 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00814 K19600 - csv:101221704 705.671