Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00815 ATGTGTCCAGCTCTGAATCTAATGAAGCAGAGGAAGGATGGATATGAACCGTCTGATACGGAGACAGAATGGCAAGAGAGCCCTTGGAATGACCCTAAGGCGAAGAAACTTGTGCTGGATTACAATAACCGACGAGCAGATTCGGCAGCATCGAAGAAGTTCAGTACTGCAGCGAATATTTCTCCTCCTGGTTCGAGAAGAAACAATGGCAAAACGCCTCACAGGCCGGCCAAAGACGACAGTGTTCTAGTTATGCATCAGAGAAACATCAGCCCCTTGTCGAGAGCAGAAAGAAGAAGACACAAATCTCCTTTTAAAGCTGGAGCAGAGGAAATTGGAAGCTCTAGCATGAGGTCAAGAAAAGAGGAGAAGTTGACTTATTCTCATGGGGGTAACAGAATAAGTCAAAAGCCAAACCACAGTAGAAGATCAGTGACTGCTCCAAGGTTGAGAACGAGAGATGAACATATGAGTGCTGTTAACGATTTATCTCAAAGGAGAGACAGAGCTGCTCCATCCTTGCAGGTCAACTCCATCCTGCACCAGTCAAAGGAGGTTTCTCAAGTGAACTCTCTTTCTGTTGGTGAAATGAACGAGATGATTGCAGATGGAAGGGTCCATAGAGGTTCGATTTTTAATGAACCGATGGTTGAAAGCACGGGGTCGATCTCGCCGGGGGACATATTCTTTTCGCGTGATGGCTTGGCTATTGGAATGAATAACAATGTCACAGGGAAGAGAAATGCGTTCAAGAATTATATAAGTCCAAGGCCTAACTTTGTGTCCAAAAAGAATGATGATACTTATAATCAAGTTGAAGTAAATGCTAATGGTAGAGGAGTTACTTCTGCTGGAACAGGTTTGTCAACGACCACAACCAATAGTGCTGCTGTAAGTAGAGAAAATAGTAGTAGAATTAGCACTGAAAGTAGTAAGATCAGTGATGTGAGTGGAAGAACAAGTGAAAGTACAAGAAGGTTTATAGCCAGTAGACGAAAGAAGAAGAACGAGATGTGGTTTTCTTGTATGAGGAATGGGCCCTGCAGGACGACGAAATCGCCCGAAAAGCGGGAGTTTGATGAAGCTACATTCATTGAAAGAGCAAATGTTGTTGAATACTTGAAACCCTTTTGGGCAGATAAGCATCGACCGGTGTCCTTAAGTGGATTCGCTTTCCATAAGCCTGAGGCGCAAACTCTCAAGCAATTAGTTTTACAAGACAGTTTTCCCCACATCCTGTTCAAGGGTCCGCGCGGATCTGGCAAACGAGTGCTCATTATGGCTCTTCTGCGCGAGATATATGGCGATTCGTGTTGGAATGTTTCTCATGATTTGCGACGTTTCCAGATTCAGGAAAGAAAACTAACGCAAGTCTTTGTTCCATTGACGTCAAGTGCTCACCATGTGGAACTAAATTTAAGCTCAGAAGCAAATGCTAAGTATGCTCTACTGGGATTGGCTAAAGAAATAGGCAGTGAATATTCCATTAATGTGGAAGCAAGAAATCTTAATCCGAAGGCTAGTTTCAAAGTGGTAATCCTTTTAGATGTAGACAAAGCTGTAGAGGATATTCAACATTTGCTTAGGTGGATTATGGATGGCTATAAGGATGCCTGCAAAGTAGTACTCTGTTGTGACAACGACACAGGCATCCTTGACTCAGTGATAAGCCGCTGCAAAGTTATCAAAATTAACCCTCCAGTAACTCATGAAATCATAGATGTACTTATCCAAATAGCAAAGAAGGAGGAATTTGACCTGCCTATGAACTTTGCTTCTAAGATTGCTGCTAAAGCAAAGCAGAACCTGAGAAAAGCAATCATGGCGCTTGAAGCATGCAAGGCACACAATTATCCATTTTCTGATGACCAGCCAATCCCCATTGGATGGGAAGAGGCCGTGGTAGAACTCGCAGCTCATATCCTCGAAGACCCGACGAATCCAAGATTACACCTAGTAAAAGAAAAAATTCAGAAGCTTCTAGTTGATTCTGTTCATCCAAAACTAATCCTCCAGAAGCTCGTGGAAGAATTTCTGAAAAGAATTGAGCTGAGGTCAAGGAGGGAACTTTACTACTGGCATGCTTATTATAACAAGAGACTCCCAACTGAAACTGGAACAGGCGCCTTACCCAAATTGGAAGAATTCGTGGCGAAGTTCATGAGCATGTACAGGAAGAGCTCCACCAACCTCGTTTATGATCGATAA 2208 43.16 MCPALNLMKQRKDGYEPSDTETEWQESPWNDPKAKKLVLDYNNRRADSAASKKFSTAANISPPGSRRNNGKTPHRPAKDDSVLVMHQRNISPLSRAERRRHKSPFKAGAEEIGSSSMRSRKEEKLTYSHGGNRISQKPNHSRRSVTAPRLRTRDEHMSAVNDLSQRRDRAAPSLQVNSILHQSKEVSQVNSLSVGEMNEMIADGRVHRGSIFNEPMVESTGSISPGDIFFSRDGLAIGMNNNVTGKRNAFKNYISPRPNFVSKKNDDTYNQVEVNANGRGVTSAGTGLSTTTTNSAAVSRENSSRISTESSKISDVSGRTSESTRRFIASRRKKKNEMWFSCMRNGPCRTTKSPEKREFDEATFIERANVVEYLKPFWADKHRPVSLSGFAFHKPEAQTLKQLVLQDSFPHILFKGPRGSGKRVLIMALLREIYGDSCWNVSHDLRRFQIQERKLTQVFVPLTSSAHHVELNLSSEANAKYALLGLAKEIGSEYSINVEARNLNPKASFKVVILLDVDKAVEDIQHLLRWIMDGYKDACKVVLCCDNDTGILDSVISRCKVIKINPPVTHEIIDVLIQIAKKEEFDLPMNFASKIAAKAKQNLRKAIMALEACKAHNYPFSDDQPIPIGWEEAVVELAAHILEDPTNPRLHLVKEKIQKLLVDSVHPKLILQKLVEEFLKRIELRSRRELYYWHAYYNKRLPTETGTGALPKLEEFVAKFMSMYRKSSTNLVYDR 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6100226 6104027 + Cp4.1LG19g09300.1 Cpe19g00815 486223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00815 735 MobiDBLite consensus disorder prediction 278 324 - -
Cpe19g00815 735 Gene3D - 569 626 - -
Cpe19g00815 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 613 IPR027417 -
Cpe19g00815 735 SUPERFAMILY post-AAA+ oligomerization domain-like 629 724 IPR008921 GO:0003677|GO:0006260
Cpe19g00815 735 MobiDBLite consensus disorder prediction 1 33 - -
Cpe19g00815 735 CDD AAA 396 562 - -
Cpe19g00815 735 MobiDBLite consensus disorder prediction 92 148 - -
Cpe19g00815 735 MobiDBLite consensus disorder prediction 278 326 - -
Cpe19g00815 735 PANTHER OS02G0704966 PROTEIN 184 730 - -
Cpe19g00815 735 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 184 730 - -
Cpe19g00815 735 MobiDBLite consensus disorder prediction 92 107 - -
Cpe19g00815 735 Gene3D - 629 724 - -
Cpe19g00815 735 Gene3D - 376 567 IPR027417 -
Cpe19g00815 735 MobiDBLite consensus disorder prediction 46 80 - -
Cpe19g00815 735 MobiDBLite consensus disorder prediction 48 68 - -
Cpe19g00815 735 MobiDBLite consensus disorder prediction 129 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00815 K10756 RFC3_5; replication factor C subunit 3/5 - csv:101218071 1279.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02062 Cpe-Chr1:17463372 Cpe19g00815 Cpe-Chr19:6100226 1.70E-13 dispersed
Cpe10g01069 Cpe-Chr10:6439149 Cpe19g00815 Cpe-Chr19:6100226 7.49E-14 dispersed
Cpe14g00835 Cpe-Chr14:6781291 Cpe19g00815 Cpe-Chr19:6100226 4.52E-10 dispersed
Cpe19g00815 Cpe-Chr19:6100226 Cpe02g00567 Cpe-Chr2:3386282 2.19E-09 dispersed
Cpe19g00815 Cpe-Chr19:6100226 Cpe13g00630 Cpe-Chr13:6038030 2.28E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g994 . . . Bda10g00139 . . . . . . . Cma07g00480 . Car07g00423 . Cpe19g00815 . Bhi03g01318 Tan03g1994 . . Hepe04g1525 . . Cla01g01919 Cam01g2005 Cec04g1663 Cco04g1725 Clacu01g2026 Cmu01g1901 Cre04g1577 . . Cone6ag1636 Cone9ag1557 . . . Cme08g00857 . Blo06g00136 . . Bpe10g00121 . . . . . Cmo07g00479 . . . . . . . . . . . . . . . . . . . . . Csa06g03254 Chy02g00635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006466 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00815 Cpe_Chr19 FPKM 0.0 0.0 0.0 0.65488 3.304223 2.60921 3.181301 0.392041 0.684975 0.627829