Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00817 ATGGATAATCTCTCCCATTCTCGCCTCCCCAACAGGGGTTCTACCTCCGTTTCTAAGAAAATTTGCAATGGCAGTAATGGCGGTGGACCTTTTGTAGCTCAGACTATCTACGACGACGTTTATGGCGGTCCTCCCAAGTTTGGTGTCTCTGCTTTGTCTCCTCGCTTCGAAGACTATGGTGAGATTTTTGGGAGCTTCCATGCCCTCCGTACTTCCTCCATTCCGATTCTTGATCTTCCGGCTGTCGATGAATCTGAGGTTTTCTTCGACGCTCGGAGCTCGGCATTTGACTATGCGGAGGTTTTTGGAGGGTTCGATGGTTTGAATTTTGCGATTTCTTATGAGGAACTGGTTGGCCCTTCCCAAGGCGTTGATGATGGCTCTTCCGACGAAGCTTGGACTCCAGCAGGAACTGATTCTTTGTCAGACTGTTCAGATCATTCTGGAAATTCTCATTGTATGTCAAATGAAGACTCTAATCAGTCATTTGGTGAAAGCACTGAATTTTCCATATCGTATAACAAGGTTAACCGAGAAGGCAATGGAAATGTATCAGATGGGAAGATACACGTAACCCAGTTGGAGATGCTTCCTGGATTCTCATATCTGGTTGATGAAGCACATCCCTCACCAAAGGGAACATATGACGATCTATCCCTGAAGACCAATGACGATAGCTATCTCAATATAGATTTTGATACAGGAAAGGTTAAGGGCAAACATCCAAAGAACACTATGCCACCCCCAGTGGACAGTAATGGCTCTGGACACGTATTCGAGGATAGCCTTATTTGTCAAAATGAATTTGGTAGAGAGGTTTTTCATTCTCATGAAGATTTCATAACCGTATCTGAAATAAGCCTTAGAACTGAACCTTCTCAAGTTCCACCACCTACTCGGCCGCCTCCCAAGTATGCTGCCAAAATGGGGGACTACACTAAAATGGCTTTAAATTGTGGGGATGCTTCTGAAATAATTTCGGATGATCATTTTAATCCTTTATTTGATGTGGAGGTCGACGCTAGTTCATCTGCAGCAGCCTCTGCTGCAGCTATGAAAGAAGCAATGGAAAAAGCTCAAGCACGTTTGCAAAGTGCAAAAGATTTGTGGGAGAGGAAGAAAGAAGGAGTCCATGGACGGATGAGACTGGATGCAAAATATGATATGAGAGAAAAGGAAGGAAATTTGACCAAGATTCCTAATCGATTTAAGAGTTTGACGGATGAAAGGGTGCAGGATATTGGTGAAATTCATGACCATAAAATGAATTTGCCTGCTGGAGAGAAGAGGAAAAAGGATGTGAAGGCAACTAAGGTTTGTTCAACACCATTTGGAGGAGAGGAACTATTAACAGTCGATGAAAAGACCGTACCAATTAGAAATGGGAGTAGATTTCTTGTGTCTGATAATCATGATTGCTGCAGTGAATGGAAAGACGCCACAGAGTTTTTTGAATTGGCAAGAGCAGATATATCTGGAAAGGAATTTGAGTTGTTGGACAATGATGAGATTTCCAACTTTGTGACTGAACCAATAGTAGCAGAGACCATCATTGAAGCATGGGAGAACGATAAGGATCAAGACAAGGATGGGAAACCATTCCATACGGCTCATGCTCTGAATGAAAACGTGAAAGATTTGGAGAATATGGTCCATGGGAAGGTGGAAAAACTAAAACCAAATAAAGACGAGACTAGGCAAAAAGAGCAGGTGAAACTTCATCAAGGTGTTTGTGATCTTGAAGCAAATGATAGGATATTTGGAGTTGCACAAGACTTTATGGAAGAAAAAAAGCGTATGTTCAATGCTAGTGAAAAAGAACATGAAAACCGTATTGAGTTTAAACAACTGGACAGTGAGCTAAAAGTTGATCAACCTGTTTCACCAATTGATATCGAACAAGAAAAGAAGAAGGTTGTTAAAGGAAAGGAAAATGGAAATATTCTCAAGGAATCTCATAGAAAAGAAAACAATGCAAATAAAATGGAAGAAGCCCTTGAGAACGAGAAAAGAGAAAAGCTGTTCTCGGAGGCTTCTGAAAGGGAAAAGCTTGAGCAAAAAAAGATGATGTTCCTCGAGCAAGAAGAAAATAAGAAAAGACTCAATTTGGTTCTTGCGGATGAGAACTTTAGGGGACAGATGGCTCGTGAAAGAGAACTGGATGGTGTCCATGGGAAGGAAGATCATGGGAAAAGGGGAAAAGAGGCTGCCAAAGTTGTAAGTGAGAGATCAAAATTAGCTCATGAGAGAGAAGATGACGACAAATGGTCAAAAAATATTCAGTATCGAGAAGAATGTGAAATAGGAGTTAAGGATTCATTTCATGAACGCAGGCCAGGTGATGTGGGTAAGTGTAAAGTGCCTCAGATGTTGGTTGAAGATTCACAATATAGTGCAGATCTCAAGGGTGCGAGTATGGAGCATGATGAATTAGAGAAATTGAGTGACAGACACGAAGTAAACTCAACAATAGGATCTCAAGCATATGTGGAAGTGAAGGATTTGGGGATATCTGCTGCGGCATTTCAAATGCATGATGACCAAAACCACTTACCCACGGTACTAGCTTGTTCAATGGGGGTGCCTGAAGAATTCTCTGTTGTAGATGAAAGTGGAGAGAGGACTACCGTCACAGGTAATAAAACTTCATCAGAAAGTGATGGAATTGATAATCTGCAATTTTCCAAAAATTCTTCTGCATTGGGTGCGAGGCAGGCAGAGATAGAACATCATAAAGTTTCAGTGGAAATGGAAGATGCTGATATTCAACTTTCTTTCAATGAATGGACCAAAAAAGTAGGCAAAGAAACAAGCTTTCAACCCAAACCTGGTGATACACAAGCAGAAGCAACTAATTCGGAAGATGCATTTTCATCTGAAAACTCAACATGTGTGGATGAGCGAGAGAATGAAATTGAAGAGAACGCACTTAAGATGGATGATATGAAAACATCACCTCCTCTGGATAGAAGTGGTGAGAGAGCAGGTCAATCTAACGTTGGCATGGAAGAGTTTGTAGGGAGAAAGACATTTGTCACCAGAATGGATTGTGATCCTGAACAACCAGAAAGTAACTTGTTTTGTCGTATGGAAGATAAAGTGAAGTTCTCTAACCAGGCTGAAGATGAGGGACAAACAGTTTCTGTTCAGGGGGTGAATATAAAGGCTGAGAAAGGAAGTGGAATGGAGTCAACTCGGCCAACTATTTCAGGAAGGATACAAAAGAGCGGGGAATTTGCCTATGAGGTCGATGCAAATCAGGCCACAGAAAGAAAGGAAAAGCTTGTGAACCAGAGCCATAAATCTAAAGGAAAAGAGAGTGAGAGAGTGAGGAGCGAATCAGAATTCGAGAATGATAGGCTTCGAAAATTGGAAGAAGAGAGGGAAAGGGAAAGAGAGAGAGAAAAGGATAGAATGCATATTGATAGAATTGCTCTTGAACCACGTGATAGAGTAGGTGCTGAAACTCGTGAAAGGGCAGAAAGGACTGCTCTGGAGAGGATGACTGCTGAAGCTCGACAAAGAGCATTGACAGAGGCACGTGAAAGATTGGAAAAGGCTTGTGCAGAGGCGAGGGAAAATTCATTGGCTGGAAAGGCAACTATGGAGGCAAGGGTAAAGGCAGAGCGTGCAGCCGTAGAAAGAGCAACTGCAGAGGCCAGGGAGAGAGCTGCAGAGAAAGCCATGTCTGACAGGACTTCCTTTGGGGTGAGAGAGAGAATGGAAAGATCTGTTTCTGACAAATTCTCTGCGTCTTCGAGAAATAATGAAATGAGACAGAAGTCTTCATCCTCTGGTCAGCCCAGCCTACAATCTCAGAGCTTTGGCTCTTCCCTTGCTTCAAGATATGCCTACCACTCGGCTTATGATGAGAGGAATGAGGGTGTTGATGGTGAATCGCCTCAAAGATGTAAAGCCAGATTAGAGAGGCATCAAAGAACAGCAGAACGTGCAGCAAAGGCTCTGGCAGAAAAAAATATGCGTGATCTTCTTGCACAAAGAGAGCAAGCTGAGAGAAATAGATTGGCTGAGACATTGGATGCTGACGTTAGGAGATGGTCAAGTGGGAAGGAAGGAAACTTGCGTGCCTTGCTTTCTACACTTCAATATATCCTTGGACCTGGTAGTGGTTGGCAGCCCATTCCCTTAACGGAAGTTATTACTGCAGCTGCTGTAAAGAAAGCGTACAGGAAAGCCACTCTGTGTGTTCATCCAGACAAATTACAACAACGGGGTGCAAGTATTCAGCAAAAGTATATATGTGAGAAGGTCTTTGATCTACTAAAGGAAGCTTGGAACAAATTCAACTCGGAAGAGCGGTAG 4323 42.59 MDNLSHSRLPNRGSTSVSKKICNGSNGGGPFVAQTIYDDVYGGPPKFGVSALSPRFEDYGEIFGSFHALRTSSIPILDLPAVDESEVFFDARSSAFDYAEVFGGFDGLNFAISYEELVGPSQGVDDGSSDEAWTPAGTDSLSDCSDHSGNSHCMSNEDSNQSFGESTEFSISYNKVNREGNGNVSDGKIHVTQLEMLPGFSYLVDEAHPSPKGTYDDLSLKTNDDSYLNIDFDTGKVKGKHPKNTMPPPVDSNGSGHVFEDSLICQNEFGREVFHSHEDFITVSEISLRTEPSQVPPPTRPPPKYAAKMGDYTKMALNCGDASEIISDDHFNPLFDVEVDASSSAAASAAAMKEAMEKAQARLQSAKDLWERKKEGVHGRMRLDAKYDMREKEGNLTKIPNRFKSLTDERVQDIGEIHDHKMNLPAGEKRKKDVKATKVCSTPFGGEELLTVDEKTVPIRNGSRFLVSDNHDCCSEWKDATEFFELARADISGKEFELLDNDEISNFVTEPIVAETIIEAWENDKDQDKDGKPFHTAHALNENVKDLENMVHGKVEKLKPNKDETRQKEQVKLHQGVCDLEANDRIFGVAQDFMEEKKRMFNASEKEHENRIEFKQLDSELKVDQPVSPIDIEQEKKKVVKGKENGNILKESHRKENNANKMEEALENEKREKLFSEASEREKLEQKKMMFLEQEENKKRLNLVLADENFRGQMARERELDGVHGKEDHGKRGKEAAKVVSERSKLAHEREDDDKWSKNIQYREECEIGVKDSFHERRPGDVGKCKVPQMLVEDSQYSADLKGASMEHDELEKLSDRHEVNSTIGSQAYVEVKDLGISAAAFQMHDDQNHLPTVLACSMGVPEEFSVVDESGERTTVTGNKTSSESDGIDNLQFSKNSSALGARQAEIEHHKVSVEMEDADIQLSFNEWTKKVGKETSFQPKPGDTQAEATNSEDAFSSENSTCVDERENEIEENALKMDDMKTSPPLDRSGERAGQSNVGMEEFVGRKTFVTRMDCDPEQPESNLFCRMEDKVKFSNQAEDEGQTVSVQGVNIKAEKGSGMESTRPTISGRIQKSGEFAYEVDANQATERKEKLVNQSHKSKGKESERVRSESEFENDRLRKLEEEREREREREKDRMHIDRIALEPRDRVGAETRERAERTALERMTAEARQRALTEARERLEKACAEARENSLAGKATMEARVKAERAAVERATAEARERAAEKAMSDRTSFGVRERMERSVSDKFSASSRNNEMRQKSSSSGQPSLQSQSFGSSLASRYAYHSAYDERNEGVDGESPQRCKARLERHQRTAERAAKALAEKNMRDLLAQREQAERNRLAETLDADVRRWSSGKEGNLRALLSTLQYILGPGSGWQPIPLTEVITAAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 1440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6110756 6117671 + Cp4.1LG19g09260.1 Cpe19g00817 486225

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00817 1440 Coils Coil 349 373 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 867 892 - -
Cpe19g00817 1440 Coils Coil 649 679 - -
Cpe19g00817 1440 CDD DnaJ 1388 1433 IPR001623 -
Cpe19g00817 1440 ProSiteProfiles dnaJ domain profile. 1376 1440 IPR001623 -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 121 161 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 1 21 - -
Cpe19g00817 1440 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 20 1435 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 133 161 - -
Cpe19g00817 1440 Coils Coil 1167 1194 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 1085 1177 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 1217 1247 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 1291 1312 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 1039 1177 - -
Cpe19g00817 1440 SUPERFAMILY Chaperone J-domain 1297 1439 IPR036869 -
Cpe19g00817 1440 Gene3D DnaJ domain 1313 1440 IPR036869 -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 1217 1277 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 871 892 - -
Cpe19g00817 1440 Coils Coil 1305 1340 - -
Cpe19g00817 1440 Coils Coil 1107 1138 - -
Cpe19g00817 1440 PANTHER AUXILIN, ISOFORM A 20 1435 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 935 1000 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 961 988 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 721 751 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 1248 1277 - -
Cpe19g00817 1440 Coils Coil 1199 1219 - -
Cpe19g00817 1440 MobiDBLite consensus disorder prediction 935 960 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00817 - - - bhj:120074172 2053.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00623 Cpe19g00817 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02071 Cpe-Chr1:17554515 Cpe19g00817 Cpe-Chr19:6110756 3.96E-50 dispersed
Cpe13g00638 Cpe-Chr13:6094862 Cpe19g00817 Cpe-Chr19:6110756 1.44E-53 dispersed
Cpe19g00103 Cpe-Chr19:813701 Cpe19g00817 Cpe-Chr19:6110756 2.80E-76 dispersed
Cpe02g00565 Cpe-Chr2:3372255 Cpe19g00817 Cpe-Chr19:6110756 6.09E-31 transposed
Cpe10g00623 Cpe-Chr10:3607670 Cpe19g00817 Cpe-Chr19:6110756 0 wgd
Cpe19g00817 Cpe-Chr19:6110756 Cpe02g00118 Cpe-Chr2:588522 6.80E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00817 Cpe_Chr19 FPKM 1.342857 1.130107 1.585351 1.113668 1.322767 0.529588 0.957526 1.115012 0.883408 0.986585