Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00818 ATGCCAACATTTACTACAATTGCGTTGGATAGGTTGTTAGAACCTGGAACTTCCAAATCTGTCGATAAGCCCCTTCCTAAACATATGCCTGCTTTGACCTTTAACCGTGCTCCGAGCACGAATTTGGAGAGGAGAAACAGCGCATCAGCTGCTGAAAGAAAAGTTCAGCGGCCTCAAATAAAGCCAGCTTTGTATACCACTCCAGAGGCAACTCCTCTCCCGGATTCACCATCTTCATTTCCTCCTTCCCCTTATATTGTCAATCACAAGCGGCGTGGACCTCGACTTTTGAAGAGTTTCTCCGAGGATGTGGTCTCTTCTCATCAAAAGATGAATGATAACGATATAGGAAATGTGAATGTGAATGTGAATGTGAATGGTTCAGATAGCAATGATGTAAAATTGAGTGAGGGTGCTTCTGTTACTGTTGACTTGCCTATTCCAAACAAAGATGGACATAGAAATGGTCTAGATTGTGCTACTAATAGTAATGTTGGTCAAAATGGTAGCGTTGATGGTGATCATGGTGCTACTGCTGTTCAACACGGGAGCAATCACACTAATAACGGAAGTACTATGACGGTGAGCAATGATGTTGCTCGGGAAAAGGATTCATTGAAGGTTGTTGTGCCAACTTTGGACAGTCTTGGAGATGCTGAAGACTTCTTCGACCCACAGGATTCTTTGAGCGTTGCGAGTAACACAGATGGAGAGGACAATGGCTATGAACGTTCAGCCAAGTTTTGTACTCCTATGGGGGAATTTTATGATGCTTGGGAAGAGATGTCCTCTGATGGTTTGCCACATCCTTCTATTTCTGTTATTGAAGCTGAATTGCGTGAAATGAGACTATCCCTATTGATGGAACTAGAGAAACGAAAGCAGGCTGAGGAAGCACTGGACAATTTGCGGGGCCAGTGGCAGAGGCTTAGAGAACATCTTTCGCTTGTAGGATTGACCCTTCCTTCAGATCCCACAGTAGCCACAAATGGGAATCACCCTGCTGAAGAATTGTGCCAACAAGTTAATATTGCTAGGTTCGTGTCGGGTTCTATTGGAAGGGGTATAGCAAGGGCAGAGGTGGAGACTGAGATGGAGGCACAGCTTGAAGCTAAGAATTTTGAGATTGCTCGATTGTTGGACCGGCTCCATTACTACGAGGCAGTGAATCATGAGATGTCCCAGAGGAATCAAGAGGCTGTAGACTTGGCACGGCGTGAGAGGCTGAGAAGGAAAAGGAGACTGAGATGGATGTGGGGTTCGGTTGCCACCGCAATCACACTCGGCACTGCAGTCTTAGCTTGGTCGTACCTCCCATCAGGAAAAGATTCGTCATCCATGAACGATTCGAAGGCCACCGAGCATGATGATGCAACAGATTGA 1383 45.84 MPTFTTIALDRLLEPGTSKSVDKPLPKHMPALTFNRAPSTNLERRNSASAAERKVQRPQIKPALYTTPEATPLPDSPSSFPPSPYIVNHKRRGPRLLKSFSEDVVSSHQKMNDNDIGNVNVNVNVNGSDSNDVKLSEGASVTVDLPIPNKDGHRNGLDCATNSNVGQNGSVDGDHGATAVQHGSNHTNNGSTMTVSNDVAREKDSLKVVVPTLDSLGDAEDFFDPQDSLSVASNTDGEDNGYERSAKFCTPMGEFYDAWEEMSSDGLPHPSISVIEAELREMRLSLLMELEKRKQAEEALDNLRGQWQRLREHLSLVGLTLPSDPTVATNGNHPAEELCQQVNIARFVSGSIGRGIARAEVETEMEAQLEAKNFEIARLLDRLHYYEAVNHEMSQRNQEAVDLARRERLRRKRRLRWMWGSVATAITLGTAVLAWSYLPSGKDSSSMNDSKATEHDDATD 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6119425 6122924 + Cp4.1LG19g09240.1 Cpe19g00818 486226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00818 460 MobiDBLite consensus disorder prediction 14 61 - -
Cpe19g00818 460 PANTHER BACTERIOPHAGE N4 ADSORPTION B PROTEIN 1 459 - -
Cpe19g00818 460 Coils Coil 286 313 - -
Cpe19g00818 460 MobiDBLite consensus disorder prediction 441 460 - -
Cpe19g00818 460 PANTHER BACTERIOPHAGE N4 ADSORPTION B PROTEIN 1 459 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00818 - - - cmos:111463164 838.565
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00624 Cpe19g00818 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00624 Cpe-Chr10:3615528 Cpe19g00818 Cpe-Chr19:6119425 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1002 . Blo16g00055 . Bda10g00140 . . . . . . Cma03g00736 . Car03g00671 Car07g00418 Sed14g1136 Cpe19g00818 Cpe10g00624 Bhi03g01326 Tan03g2002 Cmetu08g0549 . Hepe04g1528 . . Cla01g01922 Cam01g2008 Cec04g1667 Cco04g1728 Clacu01g2029 Cmu01g1904 Cre04g1579 Cone8ag0820 . Cone6ag1640 Cone9ag1560 Lsi01g00665 . . Cme08g00862 . Blo06g00138 Bda11g01856 . Bpe10g00122 . . . . . Cmo07g00475 . . . . . . . . . . . . . . . . . . . . . Csa06g03258 Chy02g00631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005787 2 1 1 0 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 0 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00818 Cpe_Chr19 FPKM 2.553275 2.588528 1.938722 1.190929 1.928175 1.606032 1.36672 2.195946 2.462192 1.822296