Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00825 ATGGATGGATACTCATCCTTGGTACCAGCTCCAAGGCCACCTCTCCTTACTCATGAATGCATCCCCAACACCATCTTGGATGGAAATTCCTACAACAACAACAACAACCCTTATTTAATGGATCAAACCTTACAATGTTCAAGAGAGCATGAAAATCTATGGTTCAATTTCTCATCAAATTACCAACAGCAACAAGAACAAGAACAACCCAACGAACAGCACCTTTCAAATCTCTATTCTTGTGTTCAATCTCCTACAAGCTACGGAGGTTTCCAAGGGCTATCAACTGGATCTAATACCAATTATTACAGCACTACTACTACTACTACTACTACTTCAACGTTGGATTTGTTGTCTTGTTCATCATTACAAGCTGCTGATCCGCATCTGGGGTTGATCTCAAGTGGGTTTAACAAAAAGAGAGCCTTATTTGGGTATGTGCAAGATTCAATAAATAATAACAGCTCCAACAGAGTAAAGAGACCACTTAACAGCTCGTCATTGGCTAAAAAGCCCAATGCTCATGAATCAAAGAGATCCTGCCCACCATTGAAGGTGAGAAAAGAGAAACTGGGCGACAGGATTTCAGCACTTCAAAGGCTGGTTGCACCTTTTGGTAAGACTGATACTTCCTCTGTTCTAACCGAAGCAATTGGCTACATTCAGTTTCTTCATGACCAAGTTGAGACTTTAAGCATGCCATATTTGGGGTCGTCTCAGAGCAAACCCTACCAGAAACTGCAGCCTGGTTCAACACAGGAAGATGGAGCAAAACCAAGGCCAGATCTTAGGAGCCGAGGGCTATGCCTTATGCCTCTTTCTTGGGCCTCATTCATTCATGGCTATGATTAA 852 42.37 MDGYSSLVPAPRPPLLTHECIPNTILDGNSYNNNNNPYLMDQTLQCSREHENLWFNFSSNYQQQQEQEQPNEQHLSNLYSCVQSPTSYGGFQGLSTGSNTNYYSTTTTTTTTSTLDLLSCSSLQAADPHLGLISSGFNKKRALFGYVQDSINNNSSNRVKRPLNSSSLAKKPNAHESKRSCPPLKVRKEKLGDRISALQRLVAPFGKTDTSSVLTEAIGYIQFLHDQVETLSMPYLGSSQSKPYQKLQPGSTQEDGAKPRPDLRSRGLCLMPLSWASFIHGYD 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6162754 6164855 - Cp4.1LG19g09050.1 Cpe19g00825 486233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00825 283 MobiDBLite consensus disorder prediction 154 171 - -
Cpe19g00825 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 237 IPR036638 GO:0046983
Cpe19g00825 283 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 279 - -
Cpe19g00825 283 MobiDBLite consensus disorder prediction 239 263 - -
Cpe19g00825 283 Gene3D - 185 241 IPR036638 GO:0046983
Cpe19g00825 283 PANTHER TRANSCRIPTION FACTOR BHLH110-LIKE 32 279 - -
Cpe19g00825 283 MobiDBLite consensus disorder prediction 154 183 - -
Cpe19g00825 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Cpe19g00825 283 CDD bHLH_AtbHLH_like 185 232 IPR045239 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00825 - - - cmos:111463101 462.611
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00636 Cpe19g00825 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00547 Cpe-Chr17:4531867 Cpe19g00825 Cpe-Chr19:6162754 4.74E-30 dispersed
Cpe19g00825 Cpe-Chr19:6162754 Cpe19g00980 Cpe-Chr19:6899236 6.92E-30 dispersed
Cpe10g00636 Cpe-Chr10:3663318 Cpe19g00825 Cpe-Chr19:6162754 1.32E-110 wgd
Cpe19g00825 Cpe-Chr19:6162754 Cpe02g00107 Cpe-Chr2:540145 1.65E-33 wgd
Cpe19g00825 Cpe-Chr19:6162754 Cpe06g00096 Cpe-Chr6:474349 2.77E-38 wgd
Cpe19g00825 Cpe-Chr19:6162754 Cpe07g00402 Cpe-Chr7:2619821 3.76E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1030 . . . . . . . . . . Cma03g00720 Cma07g00465 Car03g00660 Car07g00412 Sed14g1156 Cpe19g00825 Cpe10g00636 Bhi03g00920 Tan03g2025 Cmetu08g1183 . Hepe04g1550 . . Cla01g01940 Cam01g2028 Cec04g1688 Cco04g1752 Clacu01g2051 Cmu01g1927 Cre04g1601 . . . . Lsi01g00645 . . Cme08g00886 . . . . . . . . . Cmo03g00746 Cmo07g00463 . . . . . . . . . . . . . . . . . . . . . Csa06g03280 Chy02g00614 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011982 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00825 Cpe_Chr19 FPKM 7.880645 7.713731 9.95057 10.831403 4.016215 2.906672 3.235164 7.2057 6.935661 6.914262