Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00837 ATGTCAATGTCTGGTTTCTTCACTCTAGGCTCCACCGACCAAGAACACCAACAACCCGACACGAATCGCCCAAACCAAACACTCCCCCCGGACACCTTGTTTTGGTACAAGCCCGGAAGCGTCGAGCTATGGCAGCCCCAACAGCACCAACAGCACCAACAGCACCAACAACAATCGCTATTTCAAACGCGGTCTCACAACAACAACAACAACAATAATCTGTACTCGGATGAATCCTCGTCCAGATCCGGTAATTTAATGATGATTAGCTCCGGATCAGGCGGAGGGGGAATCAGCTGCCAAGACTGCGGCAACCAAGCCAAAAAAGACTGTACCCATATGCGATGCAGGAGTTGCTGCAACACCCGAGGCTTCCCTTGCCAGACCCATGTCAAAAGCACTTGGGTCCCTGCCGCCAAGCGCCGTCAGCGCCAACAAAAACTCGCCGCCTTACAAACCCATCCCAAACGCCACACAGATTATAACATCCCCACCACCAACACTTCTGGGTTAGAAATTGGGAATTTCCCGGCGGAATTGAACTCCCCGGCTGTGTTCCGTTGCGTTCGTCTCAGCTCCACCGACGACACCGACGATCAATACGCATATCAAACGGCGGTGAACATCGGAGGACATGTTTTCAAGGGAATTCTATACGATCAAGGACCCGAAAATAATTATGTTCCTGGTGAGACCTCGTCCGGCGGCGGTGGTGGGTTGCAACCACTGAATTTCATCGCCGGTGCCGCCGATGCCAACGCTGCTTCCTCCGCCGCATTACCCTTACTCGATCCCTCTTCGTTATACTCAGCGCCGCTCAATAGCTTCATGGCGGGTACGCAATTCTTCCTACCACCAAGATCCTAA 867 52.83 MSMSGFFTLGSTDQEHQQPDTNRPNQTLPPDTLFWYKPGSVELWQPQQHQQHQQHQQQSLFQTRSHNNNNNNNLYSDESSSRSGNLMMISSGSGGGGISCQDCGNQAKKDCTHMRCRSCCNTRGFPCQTHVKSTWVPAAKRRQRQQKLAALQTHPKRHTDYNIPTTNTSGLEIGNFPAELNSPAVFRCVRLSSTDDTDDQYAYQTAVNIGGHVFKGILYDQGPENNYVPGETSSGGGGGLQPLNFIAGAADANAASSAALPLLDPSSLYSAPLNSFMAGTQFFLPPRS 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6224497 6225925 - Cp4.1LG19g09000.1 Cpe19g00837 486245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00837 288 MobiDBLite consensus disorder prediction 45 90 - -
Cpe19g00837 288 PANTHER PROTEIN SHORT INTERNODES 3 284 - -
Cpe19g00837 288 Pfam Domain of unknown function (DUF702) 97 224 - -
Cpe19g00837 288 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 3 284 IPR007818 GO:0003700|GO:0006355
Cpe19g00837 288 MobiDBLite consensus disorder prediction 1 32 - -
Cpe19g00837 288 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 99 141 IPR006510 -
Cpe19g00837 288 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 176 223 IPR006511 -
Cpe19g00837 288 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe14g00546 Cpe19g00837 CCT
Cpe14g00546 Cpe19g00837 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00546 Cpe-Chr14:3454778 Cpe19g00837 Cpe-Chr19:6224497 5.21E-64 dispersed
Cpe15g00256 Cpe-Chr15:2450606 Cpe19g00837 Cpe-Chr19:6224497 2.00E-59 dispersed
Cpe16g00860 Cpe-Chr16:8171896 Cpe19g00837 Cpe-Chr19:6224497 7.83E-42 dispersed
Cpe01g00678 Cpe-Chr1:3961148 Cpe19g00837 Cpe-Chr19:6224497 1.84E-65 wgd
Cpe10g00646 Cpe-Chr10:3722467 Cpe19g00837 Cpe-Chr19:6224497 3.40E-52 wgd
Cpe11g00233 Cpe-Chr11:1258703 Cpe19g00837 Cpe-Chr19:6224497 5.91E-72 wgd
Cpe19g00837 Cpe-Chr19:6224497 Cpe02g00098 Cpe-Chr2:491049 1.50E-59 wgd
Cpe19g00837 Cpe-Chr19:6224497 Cpe07g00386 Cpe-Chr7:2494578 5.75E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51033 PF05142 DUF702 5.30E-54 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00837 - - cmax:111497365 486.108