Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00838 ATGGCGCTTGGAAGGCCCCGCAGTAGCAAGAGATCCTCCTCTTCTTCCTATGCTTCCACTGTTACAACCCTCATCTTCTTAGCCTTATGTGTTCTCGGAATATGGATGCTCACCTCCACCTCTGTTGTACCTCCGCAGACCACCACTCGGACTTCTTCCGATACCTCCACCGCTACTACCACCATGGACAATCTCCAACTCCCCAGATCAGAGGATAAGGAGGCGTCTGCGGTGTTTGAGGATAATCCTGGTGACCTCCCTCTTGATGCTATTAAATCCGATGATAGTAATGATAGTAATGATAGTAATGTTATCGATGACCGATCAAAGGACAATGCCAGTGACGGGCAGGAATCTAGAGACCAAGACGGGGGTGGCGGAAATGAGGCTCAATTGTCGGAGGAGAGTGCAATGACTCAAAACCAACAAGTGGTTGAGAGCCAAAAAGTAGAGGAGAAGGTAGACTTGGGAGGGAGCCAAGAACAAAACGCTAATTCATCTGATCAAAGCAATGAATCCACGGAGACTGTGGAATCTGATAATAATAAATCGAATGAAGCATCGCTCGAGATTAATCCTCAAGAACAACCACAAGAACAGCTACCGGAAGAGCCTGAAAACAATGGTAGTCAACAAGAAATTCCACAAGCAATTACAAATGAAGAGCAGCAGCAGCAGCAGCAAGCAACCGACATCCCAGAAAACAGCGGAGACTCTCAAACCGATCAACAGCAAGCAACCGACATCCCAGAAAATAGCGGAGACTCTCAAACCGATCAACAGCAAGCAACCGACATCCCAGAAAACAGCGGAGACTCTCAAAACGATCAACAGCAAGCAGCCGACATCCCAGAAAACAGCGGAGACTCTCAAACCGATCAACAGCAAGCAGCCGACATCCCAGAAAACAGCGGAGACTCTCAAACCGATCAACAGCAAGCAGCCGACATCCCAGAAAACGGCGGAAACTCTGAAAACGATCAACAGAAACCTGAAACTGAAGCTGAAAAAGTCCCACAAGAATCTGAAATCCAAAACCAGGATGATGGCAAGACCGAACAACAGCAACAACAACAGGACAGTTCAAACACGAGCAACAACAGTGAAGAAACTGCGTCGGAGCAAAATCAGCCACGAGAGGAACACCGACGCAACAAAATGCCAACTGAGAATCAAGAATCACAGAAAACTGAATTCAGGGAGAGCCAAGAAACACCAAAGGACTCAAAAACAACAGAAAACAAAGTGGAAGAGACAACCACGGCAGGGTCACTTGATACCTCGGCAATACCCAAAGAGTCGAAGGAGTCTAAAAAGTCGTGGTCGACACAAGCCGCGCAATCGGAGAACGAGAAAGATCGCCGGCGGGAAGAATCCACTAGCAACGGCAGCCTCTACGGGTACACTTGGCAGCTCTGCAACGTCACGGCGGGCACCGATTACATCCCCTGTTTAGACAACGAGAAAGCACTGAAGCAGCTGCGTACAACAAAGCACTTCGAGCACCGGGAGAGGCACTGCCCCGAGGAGGGACCCACCTGCCTTGTCGCACTGCCAGAGAATTACAAAAGATGCATCAAATGGCCCAAAAGCAGGGACAAGATTTGGTACCACAATGTGCCGCATACAAAGCTAGCCGAAGTGAAAGGCCACCAAAACTGGGTCAAGGTCACGGGCGAGTTCTTGACTTTTCCCGGCGGTGGCACCCAGTTCATCCACGGCGCTCTCCACTACATAGATTTTATTCAACAGGCTGTACCGGATATTGCATGGGGGAAGAGGACAAGAGTGGTATTGGACGTGGGCTGTGGAGTTGCCAGCTTCGGCGGCTATCTGTTCGAAAAGGATGTTCTTACAATGTCGTTTGCTCCAAAAGACGAGCATGAAGCTCAGGTGCAATTCGCACTTGAGCGGGGAATTCCGGCCATTTCTGCTGTCATGGGCTCACAACGTCTGCCATTTCCAAGCATGGTTTTTGACATTATTCACTGTGCTCGATGTAGAGTGCCTTGGCATGCAGAAGGAGGGATGCTTCTCTTAGAATTGAACCGAGTGCTGAGGCCAGGTGGATTTTTTGTTTGGTCTGCAACTCCCGTGTATCAGAGCCTGGAAGAAGACGTCGAGATTTGGAAGGAAATGTCTGATTTGACGAAGTCCATGTGTTGGGAGCTAGTGACGATTCAGAAAGACAAGCTGAATTCCATTGGGGCCGCCATTTACAGGAAACCAGCCTCAAATGAATGCTACGATCAAAGAAAACACAAGCGTCCTCCCATGTGCAAAAACGACGATGATCCGAACGCAGCTTGGTACGTGCCATTGCAAGCGTGCATGCACCGTGTACCAGTTGACAATGCAATGAGGGGCAGTAACTGGCCACAACAATGGCCGAAGCGGTTGCAAGCACCTCCTTACTGGCTAAACAGCTCACAAATGGGGATTTATGGAAAACCAGCTCCGCAAGATTTCACAACTGATTATGAACATTGGAAAAGAGTTGTGAATAAAACTTACATGAGTGGATTAGGCATAAATCTGTCCAACATCAGAAATGTGATGGATATGAGATCTGTTTATGGCGGGTTTGCAGCAGCGTTGAGAGACCTTAAAGTCTGGGTAATAAATGTGGTGAATATTGACTCTCCTGATACACTTCCGGTGATCTACGAGCGCGGTCTCTTTGGGATTTACCATGATTGGTGTGAGTCGTTCAGCACATATCCAAGAACATATGATCTACTACACGCTGATCATCTTTTCTCAAAGTTGAAAAAGAGGTGCAAACTGCAACCTGTCTTGGCAGAGGTGGATCGAATAGTAAGGCCTGGAGGCAAATTGATTATCCGAGATGAATCCAGCACGATTGGAGAAGTGGAGAACCTGTTGAAGTCTCTCCGTTGGGAAGTTCACTTGACCTTCTCCAAAAATCAGGAAGGGCTTCTGAGTGCTCAGAAAGGCGATTGGAGACCAGATACTTATGCAGAGTCTTCCTGA 2994 48.23 MALGRPRSSKRSSSSSYASTVTTLIFLALCVLGIWMLTSTSVVPPQTTTRTSSDTSTATTTMDNLQLPRSEDKEASAVFEDNPGDLPLDAIKSDDSNDSNDSNVIDDRSKDNASDGQESRDQDGGGGNEAQLSEESAMTQNQQVVESQKVEEKVDLGGSQEQNANSSDQSNESTETVESDNNKSNEASLEINPQEQPQEQLPEEPENNGSQQEIPQAITNEEQQQQQQATDIPENSGDSQTDQQQATDIPENSGDSQTDQQQATDIPENSGDSQNDQQQAADIPENSGDSQTDQQQAADIPENSGDSQTDQQQAADIPENGGNSENDQQKPETEAEKVPQESEIQNQDDGKTEQQQQQQDSSNTSNNSEETASEQNQPREEHRRNKMPTENQESQKTEFRESQETPKDSKTTENKVEETTTAGSLDTSAIPKESKESKKSWSTQAAQSENEKDRRREESTSNGSLYGYTWQLCNVTAGTDYIPCLDNEKALKQLRTTKHFEHRERHCPEEGPTCLVALPENYKRCIKWPKSRDKIWYHNVPHTKLAEVKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFIQQAVPDIAWGKRTRVVLDVGCGVASFGGYLFEKDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGSQRLPFPSMVFDIIHCARCRVPWHAEGGMLLLELNRVLRPGGFFVWSATPVYQSLEEDVEIWKEMSDLTKSMCWELVTIQKDKLNSIGAAIYRKPASNECYDQRKHKRPPMCKNDDDPNAAWYVPLQACMHRVPVDNAMRGSNWPQQWPKRLQAPPYWLNSSQMGIYGKPAPQDFTTDYEHWKRVVNKTYMSGLGINLSNIRNVMDMRSVYGGFAAALRDLKVWVINVVNIDSPDTLPVIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCKLQPVLAEVDRIVRPGGKLIIRDESSTIGEVENLLKSLRWEVHLTFSKNQEGLLSAQKGDWRPDTYAESS 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6228247 6232560 + Cp4.1LG19g09110.1 Cpe19g00838 486246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00838 997 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 503 748 IPR029063 -
Cpe19g00838 997 MobiDBLite consensus disorder prediction 44 461 - -
Cpe19g00838 997 MobiDBLite consensus disorder prediction 158 328 - -
Cpe19g00838 997 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 7 995 IPR004159 GO:0008168
Cpe19g00838 997 MobiDBLite consensus disorder prediction 87 118 - -
Cpe19g00838 997 MobiDBLite consensus disorder prediction 374 415 - -
Cpe19g00838 997 MobiDBLite consensus disorder prediction 132 147 - -
Cpe19g00838 997 MobiDBLite consensus disorder prediction 44 66 - -
Cpe19g00838 997 PANTHER METHYLTRANSFERASE PMT27-RELATED 7 995 - -
Cpe19g00838 997 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 793 968 IPR029063 -
Cpe19g00838 997 MobiDBLite consensus disorder prediction 329 348 - -
Cpe19g00838 997 MobiDBLite consensus disorder prediction 349 373 - -
Cpe19g00838 997 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 480 984 IPR004159 GO:0008168
Cpe19g00838 997 MobiDBLite consensus disorder prediction 416 430 - -
Cpe19g00838 997 Gene3D Vaccinia Virus protein VP39 577 754 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00838 - - - cmos:111463092 1830.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00647 Cpe19g00838 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01708 Cpe-Chr3:12978748 Cpe19g00838 Cpe-Chr19:6228247 2.96E-125 dispersed
Cpe10g00325 Cpe-Chr10:1890413 Cpe19g00838 Cpe-Chr19:6228247 8.71E-06 dispersed
Cpe11g00441 Cpe-Chr11:2494835 Cpe19g00838 Cpe-Chr19:6228247 1.50E-88 dispersed
Cpe19g00514 Cpe-Chr19:4381007 Cpe19g00838 Cpe-Chr19:6228247 6.50E-10 dispersed
Cpe02g00129 Cpe-Chr2:638098 Cpe19g00838 Cpe-Chr19:6228247 0 transposed
Cpe10g00647 Cpe-Chr10:3728828 Cpe19g00838 Cpe-Chr19:6228247 2.65E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1064 . . Bda04g00033 Bda10g00167 Bpe15g00369 . Bma09g00097 Bma15g00971 . . Cma03g00706 Cma07g00451 Car03g00647 Car07g00398 Sed14g1170 Cpe19g00838 Cpe10g00647 Bhi03g00898 Tan03g2044 Cmetu04g1166 . Hepe04g1565 . . Cla01g01953 Cam01g2042 Cec04g1700 Cco04g1765 Clacu01g2064 Cmu01g1941 Cre04g1615 . . Cone6ag1660 . Lsi01g00630 . . Cme08g00900 Blo05g00816 Blo06g00330 . . Bpe10g00139 Bpe06g00031 . . . Cmo03g00732 Cmo07g00448 . . . . . . . . . . . . . . . . . . . . . Csa06g03295 Chy02g00601 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000953 3 2 4 3 4 2 4 2 2 3 2 2 4 2 2 4 2 6 4 2 3 2 2 2 2 2 2 5 3 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00838 Cpe_Chr19 FPKM 2.703833 2.000386 3.938361 3.871532 9.553561 8.410492 7.570215 6.619481 6.202354 8.002375