Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00839 ATGATGCGCGGATTTCAGTTGACTCTGGCTCTGGTGGTGATCACCCTCTCCGCCCTTCGGCCAAGAGATGGCCTTACCGGAGCCGACGCTTCGACTTCCACTTCCGCCTTCGTTCAGAATGTCATCTTCTCTAACAGGATTGCCATGTTCTCCAAATCCTACTGCCCATATTGCATGGGTGCCAAACGCATCTTCAGTGAACTTCACGAAAAACCCTTTGTTGTGGAGCTTGATCTTCGAGATGATGGACCTCAAATTCAGAGTGTCCTACTAGACCTGACAGGCAGGCGCACTGTTCCTCAAATTTTTGTGAATGGCAAGCACATTGGTGGCGCTGATGATCTTAAAGCCGCAGTTGCTAGTGGTCAGTTGCAGAAACTTCTTGCATCAAGTTGA 396 49.49 MMRGFQLTLALVVITLSALRPRDGLTGADASTSTSAFVQNVIFSNRIAMFSKSYCPYCMGAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGRRTVPQIFVNGKHIGGADDLKAAVASGQLQKLLASS 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6232634 6234522 - Cp4.1LG19g09060.1 Cpe19g00839 486247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00839 131 Gene3D Glutaredoxin 28 131 - -
Cpe19g00839 131 ProSiteProfiles Glutaredoxin domain profile. 35 131 - -
Cpe19g00839 131 ProSitePatterns Glutaredoxin active site. 49 64 IPR011767 -
Cpe19g00839 131 PRINTS Glutaredoxin signature 47 65 IPR014025 -
Cpe19g00839 131 PRINTS Glutaredoxin signature 92 105 IPR014025 -
Cpe19g00839 131 PRINTS Glutaredoxin signature 106 119 IPR014025 -
Cpe19g00839 131 PANTHER GLUTAREDOXIN-C3 14 130 - -
Cpe19g00839 131 TIGRFAM GRX_euk: glutaredoxin 47 128 IPR011899 -
Cpe19g00839 131 PANTHER GLUTAREDOXIN 2 14 130 - -
Cpe19g00839 131 Pfam Glutaredoxin 47 109 IPR002109 -
Cpe19g00839 131 CDD GRX_GRXh_1_2_like 46 127 - -
Cpe19g00839 131 SUPERFAMILY Thioredoxin-like 36 129 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00839 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - csv:101222985 229.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00652 Cpe-Chr18:6646821 Cpe19g00839 Cpe-Chr19:6232634 2.48E-41 dispersed
Cpe18g00653 Cpe-Chr18:6649688 Cpe19g00839 Cpe-Chr19:6232634 3.91E-36 dispersed
Cpe19g00839 Cpe-Chr19:6232634 Cpe03g00640 Cpe-Chr3:3808499 4.02E-12 dispersed
Cpe19g00839 Cpe-Chr19:6232634 Cpe13g00891 Cpe-Chr13:7651265 8.94E-25 transposed
Cpe19g00839 Cpe-Chr19:6232634 Cpe09g01018 Cpe-Chr9:8994341 1.80E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1065 . . . . . . . . . . . Cma07g00450 . Car07g00396 Sed14g1172 Cpe19g00839 . Bhi03g00897 Tan03g2045 Cmetu04g2228 . Hepe04g1567 . . Cla01g01954 Cam01g2043 Cec04g1701 Cco04g1766 Clacu01g2065 Cmu01g1942 Cre04g1616 . Cone12ag0734 . . Lsi01g00629 . . Cme08g00901 . Blo06g00329 . . . . . . . . Cmo07g00447 . . . . . . . . . . . . . . . . . . . . . Csa06g03296 Chy02g00599 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012931 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00839 Cpe_Chr19 FPKM 3.166667 0.0 3.376534 0.0 10.086645 0.0 8.303453 4.573902 4.107807 3.424937