Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00845 ATGAGGATACTTTGTGATTCCTGTGAAAATGCTGCAGCGACCTTGTTTTGTGCAGCTGATGAGGCTGCTCTTTGTGCAGCATGTGATGTCAAGGTGCACATGTGCAATAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAGTCCGAGCGAAGTTTCCCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGAAGCTCCTTGTGTTTACAATGCGACGTGCTTGTTCATGTGGGAGGCAAGAGAATGCACAAGAGATATCTTCGGCTGGGGCAGAGAGTTGAGTTTCCTGGGGATAAACAAAATGATCCAAAGGACTTGAATGTACAAGCGATGGAACAGGCTGAAACAGTGAGAGGGCAGAATCAAGATGGGGTTGATTCAAATGGAGATGGGCATTCCAAGCGGGGGAACGAAGTGATTGATTTGAACATGTAG 459 47.06 MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICENAPAFFYCEIDGSSLCLQCDVLVHVGGKRMHKRYLRLGQRVEFPGDKQNDPKDLNVQAMEQAETVRGQNQDGVDSNGDGHSKRGNEVIDLNM 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6255132 6256838 - Cp4.1LG19g09030.1 Cpe19g00845 486253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00845 152 Gene3D Classic Zinc Finger 1 93 - -
Cpe19g00845 152 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 132 - -
Cpe19g00845 152 CDD Bbox1_BBX-like 56 95 - -
Cpe19g00845 152 SMART bboxneu5 51 96 IPR000315 GO:0008270
Cpe19g00845 152 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cpe19g00845 152 MobiDBLite consensus disorder prediction 123 152 - -
Cpe19g00845 152 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Cpe19g00845 152 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 132 - -
Cpe19g00845 152 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Cpe19g00845 152 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Cpe19g00845 152 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00649 Cpe19g00845 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00516 Cpe-Chr14:3264555 Cpe19g00845 Cpe-Chr19:6255132 1.06E-55 dispersed
Cpe19g00845 Cpe-Chr19:6255132 Cpe17g01088 Cpe-Chr17:8252826 3.11E-26 dispersed
Cpe10g00649 Cpe-Chr10:3738125 Cpe19g00845 Cpe-Chr19:6255132 1.04E-77 wgd
Cpe11g00234 Cpe-Chr11:1265779 Cpe19g00845 Cpe-Chr19:6255132 1.33E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51035 PF00643 zf-B_box 1.50E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00845 - - cpep:111781183 290.812