Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00845 ATGAGGATACTTTGTGATTCCTGTGAAAATGCTGCAGCGACCTTGTTTTGTGCAGCTGATGAGGCTGCTCTTTGTGCAGCATGTGATGTCAAGGTGCACATGTGCAATAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAGTCCGAGCGAAGTTTCCCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAGATAGATGGAAGCTCCTTGTGTTTACAATGCGACGTGCTTGTTCATGTGGGAGGCAAGAGAATGCACAAGAGATATCTTCGGCTGGGGCAGAGAGTTGAGTTTCCTGGGGATAAACAAAATGATCCAAAGGACTTGAATGTACAAGCGATGGAACAGGCTGAAACAGTGAGAGGGCAGAATCAAGATGGGGTTGATTCAAATGGAGATGGGCATTCCAAGCGGGGGAACGAAGTGATTGATTTGAACATGTAG 459 47.06 MRILCDSCENAAATLFCAADEAALCAACDVKVHMCNKLASRHVRVGLASPSEVSRCDICENAPAFFYCEIDGSSLCLQCDVLVHVGGKRMHKRYLRLGQRVEFPGDKQNDPKDLNVQAMEQAETVRGQNQDGVDSNGDGHSKRGNEVIDLNM 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6255132 6256838 - Cp4.1LG19g09030.1 Cpe19g00845 486253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00845 152 Gene3D Classic Zinc Finger 1 93 - -
Cpe19g00845 152 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 132 - -
Cpe19g00845 152 CDD Bbox1_BBX-like 56 95 - -
Cpe19g00845 152 SMART bboxneu5 51 96 IPR000315 GO:0008270
Cpe19g00845 152 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cpe19g00845 152 MobiDBLite consensus disorder prediction 123 152 - -
Cpe19g00845 152 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270
Cpe19g00845 152 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 132 - -
Cpe19g00845 152 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
Cpe19g00845 152 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270
Cpe19g00845 152 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00845 - - - cpep:111781183 290.812
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00649 Cpe19g00845 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00516 Cpe-Chr14:3264555 Cpe19g00845 Cpe-Chr19:6255132 1.06E-55 dispersed
Cpe19g00845 Cpe-Chr19:6255132 Cpe17g01088 Cpe-Chr17:8252826 3.11E-26 dispersed
Cpe10g00649 Cpe-Chr10:3738125 Cpe19g00845 Cpe-Chr19:6255132 1.04E-77 wgd
Cpe11g00234 Cpe-Chr11:1265779 Cpe19g00845 Cpe-Chr19:6255132 1.33E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1083 Blo04g00894 Blo16g00074 . Bda10g00172 . Bpe13g00423 . Bma15g00960 Cmo04g00794 . Cma03g00703 Cma07g00442 Car03g00645 Car07g00389 . Cpe19g00845 Cpe10g00649 Bhi03g00888 . . . . . . Cla01g01962 Cam01g2052 Cec04g1710 Cco04g1775 Clacu01g2073 Cmu01g1950 Cre04g1625 . . Cone6ag1668 Cone9ag1590 Lsi01g00620 . . Cme08g00909 . Blo06g00321 Bda11g01843 . . . . Bma06g00103 . Cmo03g00728 Cmo07g00440 . . . . . . . . . . . . . . . . . . . . . Csa06g03304 Chy02g00591 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00334 CCT 6 333 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 8.4e-45 178.3
Cpe07g00334 CCT 4 333 C2C2-CO-like Transcription Factor Family AT3G02380 50.6 7.7e-43 171.8
Cpe11g00283 CCT 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 2.1e-83 306.6
Cpe07g00334 CCT 1 333 C2C2-CO-like Transcription Factor Family AT5G24930 58.9 6.5e-77 285.0
Cpe04g01287 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 51.3 6.7e-58 221.9
Cpe18g00605 CCT,CST 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.4 4.8e-56 215.7
Cpe04g01287 CCT,CST 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 2.8e-64 243.0
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 5.8e-89 325.1
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.2e-87 319.3
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.4 2.7e-86 316.2
Cpe16g00362 CST 25 293 C2C2-CO-like Transcription Factor Family AT3G07650 50.5 6.7e-53 205.3
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.4e-87 320.5
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.1e-84 310.8
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.6e-84 308.5
Cpe16g00362 CST 88 293 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 1.5e-49 194.1
Cpe05g01383 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.4e-87 320.5
Cpe15g00673 CCT,CST 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 1.1e-84 310.8
Cpe04g00659 CCT,CST 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 5.6e-84 308.5
Cpe16g00362 CST 88 293 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 1.5e-49 194.1
Cpe04g00107 CCT,CST,ECH 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.6 2.7e-53 206.5
Cpe15g00559 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 52.9 1.2e-48 191.0
Cpe01g00595 CST 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 55.2 5.0e-57 218.8
Cpe01g00702 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 1.5e-55 213.0
Cpe14g00516 . 1 193 C2C2-CO-like Transcription Factor Family AT2G21320 58.5 1.1e-53 206.8
Cpe19g00845 CST 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 4.6e-49 191.4
Cpe10g00649 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 8.8e-48 187.2
Cpe01g00702 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 3.2e-56 215.3
Cpe14g00516 . 1 192 C2C2-CO-like Transcription Factor Family AT4G38960 61.5 2.7e-55 212.2
Cpe19g00845 CST 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 66.9 1.5e-50 196.4
Cpe10g00649 CST 1 106 C2C2-CO-like Transcription Factor Family AT4G38960 82.1 3.2e-48 188.7
Cpe04g00107 CCT,CST,ECH 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.9 1.4e-54 210.3
Cpe15g00559 CCT,CST,ECH 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 55.6 5.9e-50 194.9
Cpe07g00385 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.0 1.7e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011988 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51035 PF00643 zf-B_box 1.50E-06 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00845 Cpe_Chr19 FPKM 37.120277 39.781551 28.896627 27.996922 33.207039 36.372383 33.809929 24.942034 26.079178 28.161877