Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00846 ATGAGGATTATTTTTGTGTTGTTCTTTGGGCTCCTGTTGTTTTCCGGTGGTTTCTCTTCCTCCGCCGCCGACATCAGGGCGGAGATTCAGGCATTGATGTCTTTTAAGCTTAACCTTCATGACCCTCTTGGTGCATTGACTGGGTGGGATTCTTCAACCCCTTTGGCGCCTTGTGACTGGAGAGGCGTTTTATGTGTCAATAATCGTGTCACTGATCTTCGTTTGCCTCGTCTTCAACTTTCCGGCCGGTTGACCGATCAGTTGGCTAATTTGCCGATGCTCCGGAAGTTGAGTATTCGATCTAATTTCTTCAATGGTACCATTCCCTCTTCTTTGTCGAAATGTGCGTTTCTACGTTCGATTTTCTTACAGTACAACTCGTTTTCCGGTGACCTTCCGGTGGAGTTTGGGAACTTAACCAATCTCCATATTCTCAACGTGGCGGCGAATCGTCTCTCCGGCGGAATTCCCGACGACCTTCCGAGCAGTCTAAAGTATCTCGATCTTTCGTCGAATGCATTCTCCGGTCAGATTCCGAGGAGCGTTGTGAATATGACGGAGCTTCAGGTTGTGAATCTCTCTTTCAATAGATTTGGCGGCGAGATTCCGGCGAGCTTTGGTGAGCTGCAGAAGCTTAAACATCTTTGGTTGGATCATAATGTTTTAGAAGGGACATTACCTTCGGCTCTTGCGAATTGTTCTTCGCTTGTTCATTTGAGCGTTGAGGGAAATGCTCTTCAAGGCATAATCCCGACAGCCATCGGAGCTCTTCCGAATCTTCAAGCTATTTCGCTCTCGCAAAATAGTCTCACTGGTTCAGTTCCTTACTCTCTGTTTTGCAATGTGTCGTCTCATGCGCCGTCTCTTCGAATCGTTCAACTTGGATTTAATGCGTTCACGGATATTGTCAAACCTCCGACAGCGACATGTTTTAGTGTTCTACAGGTCCTTGATATCCAACACAATCAGATAAAGGGGGAATTCCCCTTGTGGTTAATGGGTATTCCGACATTGACAGTCTTGGATTTTTCTGTCAATAATCTCTCCGGCGCGATTCCTCCCGGAATTGGGAATCTCTCGGGATTACAAGAGCTTAAAATGGCTAACAATTCGTTCCACGGCGCGATTCCGTCGGAAATCAAGAACTGTACTTCGATTTCTATTTTGAATCTCAGTGCTAATAGTTTTTCTGGGAAGATTCCGTCCAGTCTTGGCAGTCTCTTCAAGCTAACCACCTTGGATTTGAGCAAACAGAATCTCTCCGGCGAGCTGCCGTTTGAGCTCTCTGGTTTGCCTAATTTGCAGGTGATTGCTCTACAAGAGAACAAGCTATCTGGGAAAGTTCCTGATGGATTCAGTAGTTTAATGGGTTTGCGGTATCTGAATCTAAGCTCTAATGGATTTTCCGGCGAAATCCCTTCAAATTATGGGTTTCTCCGATCACTTGTTTCACTGTCGTTGTCGAAAAATCACATTTCTGGGTCGATCCCTTCAGAGCTAGGGAACTGCTCTGTTCTAGAACATTTGGAGGTCCGTTCAAATGCTCTTTCCGGCGATATTCCGGCGGATATTTCTCGTTTATCTCATCTAGAAGAGCTCGATTTGGGTGGAAATAATTTAACTGGCGAAATCCCTGAAGAGATCTCTCGTTGCTTGTCTTTAAAATCGCTCCTTCTCGACTCGAATCGTCTCTCCGGTAGCATACCGGAGTCGTTATCAGAGCTCTTGAACTTAACCGAGCTCGACCTCTCATCCAACAATTTGAGTGGCGTTATTCCTCTTAATCTTAGTTCAATTACTGGATTAGTGAGGTTAAACGTCTCGAGTAATGATCTAGAAGGCGAAATCCCAGCTGGTTTAGGCTCTAGATTCAATAACTCAGCTGTGTTTGCTAATAATTCCAAGCTATGTGGGAAACCATTGGCTTGGAATTGTAAGGATACAAAGAAAAAAGATAGAACAAAGAGATTGATATTATTCATAGCAGTGGCCGCCAGTGGAGCTTGTCTTTTGGCTTTGTGTTGCTGCTTTTACATTTTCAGCTTGTTGCGATGGCGGAAGAGGCTCAAAGAGAGGGCGTCCGGCGAGAAGAAAACAAGCCCAGCAAGGGTTAGCTCAGCGGCAAGTGGCGGCCGTGGAAGCACAGAAAATGGAGGGCCAAAGCTTGTGATGTTCAACAACAAGATCACTCTAGCTGAAACAATTGAAGCGACAAGGCAATTCGATGAAGAAAATGTTCTAAGCAGGACACGTTATGGGTTAGTTTTCAAAGCTTGTTACAACGACGGCATGCCTGGCTTGCTCGAGCTGGACCCTGAATCCTCTGAATGGGAAGAGTTTTTGCTTGGTGTGAAAGTTGGATTACTTTGCACTGCACCCGATCCCCGCGATCGACCAGCCATGTCGGATATCGTTTTCATGCTCGAAGGATGTCGTGTTGGACCCGACATCCCTTCCTCGGCTGATCCCACCTCCCAACCGTCACCGGCG 2490 46.22 MRIIFVLFFGLLLFSGGFSSSAADIRAEIQALMSFKLNLHDPLGALTGWDSSTPLAPCDWRGVLCVNNRVTDLRLPRLQLSGRLTDQLANLPMLRKLSIRSNFFNGTIPSSLSKCAFLRSIFLQYNSFSGDLPVEFGNLTNLHILNVAANRLSGGIPDDLPSSLKYLDLSSNAFSGQIPRSVVNMTELQVVNLSFNRFGGEIPASFGELQKLKHLWLDHNVLEGTLPSALANCSSLVHLSVEGNALQGIIPTAIGALPNLQAISLSQNSLTGSVPYSLFCNVSSHAPSLRIVQLGFNAFTDIVKPPTATCFSVLQVLDIQHNQIKGEFPLWLMGIPTLTVLDFSVNNLSGAIPPGIGNLSGLQELKMANNSFHGAIPSEIKNCTSISILNLSANSFSGKIPSSLGSLFKLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGKVPDGFSSLMGLRYLNLSSNGFSGEIPSNYGFLRSLVSLSLSKNHISGSIPSELGNCSVLEHLEVRSNALSGDIPADISRLSHLEELDLGGNNLTGEIPEEISRCLSLKSLLLDSNRLSGSIPESLSELLNLTELDLSSNNLSGVIPLNLSSITGLVRLNVSSNDLEGEIPAGLGSRFNNSAVFANNSKLCGKPLAWNCKDTKKKDRTKRLILFIAVAASGACLLALCCCFYIFSLLRWRKRLKERASGEKKTSPARVSSAASGGRGSTENGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPAMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6260586 6263980 + Cp4.1LG19g08970.1 Cpe19g00846 486254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00846 830 ProSiteProfiles Leucine-rich repeat profile. 577 598 IPR001611 GO:0005515
Cpe19g00846 830 Gene3D Ribonuclease Inhibitor 23 161 IPR032675 -
Cpe19g00846 830 Gene3D Ribonuclease Inhibitor 162 278 IPR032675 -
Cpe19g00846 830 MobiDBLite consensus disorder prediction 694 721 - -
Cpe19g00846 830 SMART LRR_sd22_2 139 169 - -
Cpe19g00846 830 SMART LRR_sd22_2 527 550 - -
Cpe19g00846 830 SMART LRR_sd22_2 575 596 - -
Cpe19g00846 830 SMART LRR_sd22_2 257 284 - -
Cpe19g00846 830 SMART LRR_sd22_2 209 235 - -
Cpe19g00846 830 SMART LRR_sd22_2 479 511 - -
Cpe19g00846 830 Pfam Leucine rich repeat 187 246 IPR001611 GO:0005515
Cpe19g00846 830 Pfam Leucine rich repeat 480 540 IPR001611 GO:0005515
Cpe19g00846 830 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Cpe19g00846 830 Pfam Leucine rich repeat 409 467 IPR001611 GO:0005515
Cpe19g00846 830 PANTHER LRR RECEPTOR-LIKE KINASE 18 391 - -
Cpe19g00846 830 PANTHER LRR RECEPTOR-LIKE KINASE 288 764 - -
Cpe19g00846 830 PANTHER LRR RECEPTOR-LIKE KINASE 765 826 - -
Cpe19g00846 830 SMART LRR_typ_2 91 115 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 527 551 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 479 503 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 185 208 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 209 232 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 257 281 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 575 599 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 335 359 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 139 163 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 431 454 IPR003591 -
Cpe19g00846 830 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 18 391 - -
Cpe19g00846 830 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 288 764 - -
Cpe19g00846 830 Gene3D Ribonuclease Inhibitor 279 654 IPR032675 -
Cpe19g00846 830 SUPERFAMILY L domain-like 27 302 - -
Cpe19g00846 830 SUPERFAMILY RNI-like 309 643 - -
Cpe19g00846 830 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Cpe19g00846 830 MobiDBLite consensus disorder prediction 699 713 - -
Cpe19g00846 830 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 765 826 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00846 - - - eus:EUTSA_v10024296mg 815.839
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00650 Cpe19g00846 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00684 Cpe-Chr14:4488459 Cpe19g00846 Cpe-Chr19:6260586 5.73E-06 dispersed
Cpe19g00846 Cpe-Chr19:6260586 Cpe07g00505 Cpe-Chr7:3319669 9.96E-40 dispersed
Cpe10g00650 Cpe-Chr10:3742794 Cpe19g00846 Cpe-Chr19:6260586 1.11E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1086 Blo04g00893 . Bda04g00029 . . . . Bma15g00956 . . . Cma07g00441 . . . Cpe19g00846 Cpe10g00650 . . . . . . . . . . . . . . . . Cone6ag1671 . . . . . . . . . . . Bma03g00969 . . . Cmo07g00439 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003585 3 1 4 3 4 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 0 1 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00846 Cpe_Chr19 FPKM 136.495636 146.742508 46.286457 44.20055 49.862114 51.1436 43.811394 59.357834 55.865345 57.012287