Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00854 ATGGCGATTAGTCATCAGCACCTCAAATTGGAAGACCCTTTTCTTCAAAATTACAAGCCCTCAGAGCTACGGATCGCTTCTGAGTTTCTTACTACTTGGCTTCCCTTTCTTTCCAGAGATCTCTGTCAAGATTGCACGCAATTGCTCTCGGATCGAATCCGCGCCCTTGATCCAGCTGTCCATCCCGACGAGGACTCGAGTTCTGCGCCTCCCCTAAGAGAGAAAGCCATGAACGAGAGTAATGGGAATGAGGATGATGCTTGTGATGCAAATTCTCTGGGAAGTTGGAAAGATGAAGCGGAAACAAATTCATTAGGGAGTTGGCAGGATGGCATAAATGAAGGGAATGAAGCTGATGGATTGCCTGAAACTTCTTCTAGTGAGCCATCCTCTAAATTAAATTCCACCAAGACATCAGGGCCTCGATTGTCGTGGGCCGACATGACTCAGGAGGATGAACTAGAAGAAGAGGAAGATGAGTGCGAAACAGAGAAAAGATTAGTCAATGCGAACGCAGGGAAATTAACAATATCGAAGGTTATTGAGAAGCCTAAGCTATCTAGAGAGCAAAGAGAGTACATCAGGTTCATGAGTGTTGGACGAAAGAAAGATTTTATTTGTTTGGAGAGGTTTAAAGGAAAATTTGTAAACATTCTTGAAGGACTTGAGCTTCATACAGGCATTTTTAGCGCTGCAGAACAGAAGAGAATAGTTGATCATGTTTATGCACTACAGGAGATGGGCATGAAGGGAGAATTAAGAGAACGAACATTTTCTGCTCCCAAAAAATGGATGAAGGGAAAGGGACGTGTAACTCTGCAGTTTGGGTGCTGTTACAATTATGCAGCTGATAAAAATGGCAACCCTCCTGGAATTCTTCAAAGTGAAATTGTGGATTCAATTCCTTCTCTCTTTAAGGTGATCATTAGAAGGTTGGTGAGATGGCATGTGATTCCTCCAACATGTGTTCCTGATAGTTGCATTGTGAACATCTATGACGAAGGGGACTGTATTCCTCCCCATATTGACAACCATGATTTTGTTCGACCGTTTTGCACTGTGTCGTTCCTCAGTGAATGCAATATTGTTTTTGGAACAAACCTTTCTATCGTAGGTCCTGGTCAATTTTCTGGGCCGATTGCAATCCCCCTGCCTGTCGGGTCTGTTCTTGTGTTGAATGGAAATAGTGCCGATGTTGCTAGACATTGTGTACCTGCAGTCCCTACAAAGAGGATATCAATTACATTTAGGAGAATAGATGAGTCCAAAAGGCCAATTGAGTATGCTCCAGAACCGGATTTGCAGGGAATCCAACCATTGCCCTACGAAGCAAGTAAAAATGATGTACCAACTTCTCCTGTATCATCAGAAAGGGAAATAAGGAGGCAGCCATTTAGGCGCGGTGGTGGTCATATGAGAACCAGGGGATCTGGAAACAGAAGTGACACTCAATTTGAGCCACGGAATCCAGGTAGGGCTCGGTACACGTCGTCGGATAGGAGGAGCAGAGTAAATCTAGAAGACAGCTGA 1530 44.12 MAISHQHLKLEDPFLQNYKPSELRIASEFLTTWLPFLSRDLCQDCTQLLSDRIRALDPAVHPDEDSSSAPPLREKAMNESNGNEDDACDANSLGSWKDEAETNSLGSWQDGINEGNEADGLPETSSSEPSSKLNSTKTSGPRLSWADMTQEDELEEEEDECETEKRLVNANAGKLTISKVIEKPKLSREQREYIRFMSVGRKKDFICLERFKGKFVNILEGLELHTGIFSAAEQKRIVDHVYALQEMGMKGELRERTFSAPKKWMKGKGRVTLQFGCCYNYAADKNGNPPGILQSEIVDSIPSLFKVIIRRLVRWHVIPPTCVPDSCIVNIYDEGDCIPPHIDNHDFVRPFCTVSFLSECNIVFGTNLSIVGPGQFSGPIAIPLPVGSVLVLNGNSADVARHCVPAVPTKRISITFRRIDESKRPIEYAPEPDLQGIQPLPYEASKNDVPTSPVSSEREIRRQPFRRGGGHMRTRGSGNRSDTQFEPRNPGRARYTSSDRRSRVNLEDS 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6300896 6305584 + Cp4.1LG19g08940.1 Cpe19g00854 486262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00854 509 SUPERFAMILY Clavaminate synthase-like 218 419 - -
Cpe19g00854 509 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 323 420 IPR005123 -
Cpe19g00854 509 Pfam 2OG-Fe(II) oxygenase superfamily 222 417 IPR027450 -
Cpe19g00854 509 MobiDBLite consensus disorder prediction 96 111 - -
Cpe19g00854 509 MobiDBLite consensus disorder prediction 425 509 - -
Cpe19g00854 509 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 5 502 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cpe19g00854 509 PANTHER RNA DEMETHYLASE ALKBH9B 5 502 - -
Cpe19g00854 509 Coils Coil 151 171 - -
Cpe19g00854 509 MobiDBLite consensus disorder prediction 119 145 - -
Cpe19g00854 509 Gene3D - 206 427 IPR037151 -
Cpe19g00854 509 MobiDBLite consensus disorder prediction 493 509 - -
Cpe19g00854 509 MobiDBLite consensus disorder prediction 59 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00854 K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] - csv:101203292 858.596
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00658 Cpe19g00854 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g01004 Cpe-Chr12:8413101 Cpe19g00854 Cpe-Chr19:6300896 3.29E-33 dispersed
Cpe17g00837 Cpe-Chr17:6488604 Cpe19g00854 Cpe-Chr19:6300896 4.44E-30 dispersed
Cpe10g00658 Cpe-Chr10:3779231 Cpe19g00854 Cpe-Chr19:6300896 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1105 . . . Bda10g00181 . . . . . . Cma03g00691 . Car03g00636 Car07g00380 Sed14g1184 Cpe19g00854 Cpe10g00658 Bhi03g00874 Tan03g2066 Cmetu06g2758 . Hepe04g1586 . . . . . . . . . . . . Cone9ag1602 Lsi01g00607 . . Cme08g00920 . . . . Bpe10g00151 . . . . Cmo03g00717 Cmo07g00430 . . . . . . . . . . . . . . . . . . . . . Csa06g03318 Chy02g00580 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003475 1 1 1 0 1 2 2 2 2 1 2 2 1 2 1 2 2 3 2 1 1 1 1 2 2 1 2 3 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00854 Cpe_Chr19 FPKM 15.328998 18.781408 12.370538 13.794206 11.354842 12.096239 12.255798 8.709895 7.104306 8.174102