Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00860 ATGGAGCAGTGGAAGACTGGAGATTTCTCTCAATCTATTGTTACAGCTGATTTAGTTCCTTCCTCGTCGCTTCCGCCTCAGCCTCTCTCTTTGCCGTCGAGTCGCCACCATAACAACCAACTTCCTGAATCCAGGTTAAGAACAGACGAGGAAGTAAAAGATCCTGTAGCAGTGAGAAAAATTCAGAAGGCAGATCGTGAAAAATTGAGGAGAGACAGGCTGAATGAACATTTTCTTGAGCTCGGAAACACGTTAGATCCAGATAGGCCCAAAAATGACAAGGCTACCATCCTTACAGACACTATTCAAATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTAAAAGCTGACTATGAAGCTCTTTCTGAAGAATCACGTGAGTTAACACAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCATTAAAATCAGATATCGAAAATCTAAATGCTCAGTATCAGCAAAGATTGAGGGTCATGTTTCCCTGGGCTACCATGGATCCTTCGGTGGTCATGGGGCCCCCATATTCATACCCAGTTTCTGTTCCCGTTCCCCCTGGACCAATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGAAGTCAGAATCCCGGTGCTATTCCTAACCCCTGTTCTACATTTGTCCCGTATACTGCTGCTGCCAATCATCCGGTTGAACAGCCCTCTGCCCAATATGCTTCCAATTCACACATCTCTAGCAAACAAGATTCCAGAAGTAAATCATCAGATCATCCTAAGCGTAGCAATGTGGAAAGGTGCGACGAATCTAATGATGTAGCAACGGACCTTGAACTTAAGATGCCTGGATCTTCAACACAACAGGATGCATCCTCTGCAAGTAAGAAAGGTAAGCAGTCACAGAGGAAAGAAAAAAGTGTTACAGATTGTAGTTCTTCAAGTAGATTTTCTTCGTCCCAAGTTCTACAAGATAGCTCCTCTAATAGCGTTGGCGACATTCCGAAACAGAACAACTGA 1005 44.08 MEQWKTGDFSQSIVTADLVPSSSLPPQPLSLPSSRHHNNQLPESRLRTDEEVKDPVAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVSVPVPPGPIPMHPSLQPFTFFGSQNPGAIPNPCSTFVPYTAAANHPVEQPSAQYASNSHISSKQDSRSKSSDHPKRSNVERCDESNDVATDLELKMPGSSTQQDASSASKKGKQSQRKEKSVTDCSSSSRFSSSQVLQDSSSNSVGDIPKQNN 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6354924 6359374 - Cp4.1LG19g08860.1 Cpe19g00860 486268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00860 334 PANTHER TRANSCRIPTION FACTOR BHLH121 31 333 IPR044579 GO:0003700|GO:0055072
Cpe19g00860 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 108 IPR011598 GO:0046983
Cpe19g00860 334 MobiDBLite consensus disorder prediction 17 53 - -
Cpe19g00860 334 Gene3D - 57 141 IPR036638 GO:0046983
Cpe19g00860 334 MobiDBLite consensus disorder prediction 306 334 - -
Cpe19g00860 334 MobiDBLite consensus disorder prediction 276 291 - -
Cpe19g00860 334 MobiDBLite consensus disorder prediction 17 39 - -
Cpe19g00860 334 SMART finulus 64 114 IPR011598 GO:0046983
Cpe19g00860 334 MobiDBLite consensus disorder prediction 246 271 - -
Cpe19g00860 334 CDD bHLH_AtILR3_like 63 137 - -
Cpe19g00860 334 Pfam Helix-loop-helix DNA-binding domain 59 108 IPR011598 GO:0046983
Cpe19g00860 334 PANTHER TRANSCRIPTION FACTOR BHLH11 31 333 - -
Cpe19g00860 334 Coils Coil 98 153 - -
Cpe19g00860 334 MobiDBLite consensus disorder prediction 232 334 - -
Cpe19g00860 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 128 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00664 Cpe19g00860 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01506 Cpe-Chr4:11885804 Cpe19g00860 Cpe-Chr19:6354924 3.79E-22 dispersed
Cpe09g00886 Cpe-Chr9:8079280 Cpe19g00860 Cpe-Chr19:6354924 4.98E-08 dispersed
Cpe16g00457 Cpe-Chr16:5791434 Cpe19g00860 Cpe-Chr19:6354924 1.99E-14 dispersed
Cpe18g00800 Cpe-Chr18:7486873 Cpe19g00860 Cpe-Chr19:6354924 7.67E-21 dispersed
Cpe10g00664 Cpe-Chr10:3835404 Cpe19g00860 Cpe-Chr19:6354924 1.46E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51039 PF00010 HLH 6.40E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00860 - - csv:101222613 533.102