Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00864 ATGGCTTCCTTTTCCATTAAACTTCTCTTCTTTTCATTCCCTTTCTTCTTCCTCTTCCTTTCCCTCACTCACTCTGCAACCATCACTCTCCAAAACAACTGCACTCACACAATCTGGCCCGGCATTTTATCCGGCGCCGGAACCGCCCCTCTCTCCACCACCGGTTTCCCCCTCCTCCCCGGCACTACTTCTCTCCTCTCTCTCCCCACCGCCTGGTCCGGCCGCATTTGGGCCCGCACTTTCTGCTCCACCGATTCCTCCGGCCACTTCTCCTGCGCCACTGCCGACTGCGGCTCTGGCCTTGTCGAATGCAACGGCGCCTGCGCCACCCCACCCGCCACTCTCGCTGAGTTCACCCTCAACGGCGGTGGTGGCTTCGATTTCTACGACGTCAGCCTCGTCGACGGCTACAACATTGCGATGCAAATCGTGGCGGAAGGTGGAAAGTCAGGAAACTGTACGGCCACTGGTTGTATTGCGGATTTAAACGGGGATTGCCCAGAGGAGCTGCAGGTGGTGATGGGCGGCGGAGAGGATGGTCGGAACCGGAGCGTGGCGTGCAAAAGCGCGTGTGTAGCGTTCGGGAAAGCGGAATATTGCTGCAGTGGGGCGTTTGCAAATCCTAACACGTGTAAACCGAGTAATTACTCGAAATTCTTTAAGAACAATTGCCCGTTGGCTTACAGTTACGCCTTCGACGACGGAACCAGCACCTTCACCTGTATGTCGGCCAATTATGTCGTCACTTTTTGCCCCTCGCCGTTGGCCAGTTTCAAGGCTTCTAGCAAACCACAACCGCAAGCGGCGGACGTTTCAGGCAGCCGACGTCGAGCTGCACCGCCGTGTTTAGCTATTCTCACCGCCGTTTGGGTGGCCAGCATTTCAATGGAGCTGGTCTGCCATTTCCGACATTCTTGTCTCTTCTTGTCGAGCCTGGTTTTGCTTCTTCTTTTCAAAGAGGTTTCTTGTGCTACATTTATGTTCGTTAACAAGTGCGATTTCACCGTCTGGCCGGGAATTCTCGCCAGCGCCGGTAGCCCCAAACTGGAAACCACGGGTTTCGAGCTGAAAGAAGGAAATTCTCGCTCTTTAGAAGCTCCGACAGGATGGTCCGGTCGGTTTTGGGGCCGTACCGGCTGCGATTTTGACGGCTCCGGTCGTGGAAGCTGCAATACCGGCGACTGCGGCTCTGGTGAGATGGAGTGCAACGGCGCAGGTGCCACGCCGCCGGCCACCTTAGCTGAATTCACTCTCGGCTCCGGTTCTCAGGATTTTTACGACGTCAGCCTGGTTGATGGCTATAATTTGCCGATGATCGTCGAGGGAACTGGCGGGTCAGGCACGTGTGCGACGACCGGCTGCATTACAAACGTGAACCAGCTGTGCCCAGTGGAATTGAAGGCTGAAGGCGGCGGCGCGTGCAAAAGCGCTTGTGAGGCATTTGCCACGCCGGAATACTGTTGCAGCGGCGCGTACAACTCCCCAGCGACTTGCCGACCGTCAATATACTCACTAATGTTCAAATCGGCGTGCCCCAGATCATACAGTTACGCCTATGACGATGCCACGAGCACATTCACTTGTAGAGGAGCTGATTACACCATCACATTTTGCCCTTCTACTCCGAGTCGAAAATCTTCGAGAGATTCGCCACCGATGGTACCAGAATCGACAACAGAGCAGTCGGGGTCAGAACCAATAACTGGGTCGGGATTGGAATCGGGATCGGACCCAATACAAGGAGCAGCTTTGAGTAATTCTTGGCTTGCAGATATGGCTATAGGAAATTCTTCCATGGCTACGAAATCAAGCTTGACATTTCAATATTTGACAATTTTGATATCGATTCTATTGCTTATTCTCTCGGAATGA 1872 54.11 MASFSIKLLFFSFPFFFLFLSLTHSATITLQNNCTHTIWPGILSGAGTAPLSTTGFPLLPGTTSLLSLPTAWSGRIWARTFCSTDSSGHFSCATADCGSGLVECNGACATPPATLAEFTLNGGGGFDFYDVSLVDGYNIAMQIVAEGGKSGNCTATGCIADLNGDCPEELQVVMGGGEDGRNRSVACKSACVAFGKAEYCCSGAFANPNTCKPSNYSKFFKNNCPLAYSYAFDDGTSTFTCMSANYVVTFCPSPLASFKASSKPQPQAADVSGSRRRAAPPCLAILTAVWVASISMELVCHFRHSCLFLSSLVLLLLFKEVSCATFMFVNKCDFTVWPGILASAGSPKLETTGFELKEGNSRSLEAPTGWSGRFWGRTGCDFDGSGRGSCNTGDCGSGEMECNGAGATPPATLAEFTLGSGSQDFYDVSLVDGYNLPMIVEGTGGSGTCATTGCITNVNQLCPVELKAEGGGACKSACEAFATPEYCCSGAYNSPATCRPSIYSLMFKSACPRSYSYAYDDATSTFTCRGADYTITFCPSTPSRKSSRDSPPMVPESTTEQSGSEPITGSGLESGSDPIQGAALSNSWLADMAIGNSSMATKSSLTFQYLTILISILLLILSE 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6375834 6381271 + Cp4.1LG19g08770.1 Cpe19g00864 486272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00864 623 SUPERFAMILY Osmotin, thaumatin-like protein 26 253 IPR037176 -
Cpe19g00864 623 MobiDBLite consensus disorder prediction 541 576 - -
Cpe19g00864 623 PANTHER - 21 266 - -
Cpe19g00864 623 CDD TLP-PA 27 251 - -
Cpe19g00864 623 ProSitePatterns Thaumatin family signature. 386 402 IPR017949 -
Cpe19g00864 623 ProSiteProfiles Thaumatin family profile. 324 539 IPR001938 -
Cpe19g00864 623 CDD TLP-PA 325 538 - -
Cpe19g00864 623 SUPERFAMILY Osmotin, thaumatin-like protein 324 540 IPR037176 -
Cpe19g00864 623 PRINTS Pathogenesis-related protein signature 386 415 IPR001938 -
Cpe19g00864 623 PRINTS Pathogenesis-related protein signature 325 337 IPR001938 -
Cpe19g00864 623 PRINTS Pathogenesis-related protein signature 424 440 IPR001938 -
Cpe19g00864 623 PRINTS Pathogenesis-related protein signature 373 384 IPR001938 -
Cpe19g00864 623 PRINTS Pathogenesis-related protein signature 529 538 IPR001938 -
Cpe19g00864 623 SMART tha2 28 252 IPR001938 -
Cpe19g00864 623 SMART tha2 326 539 IPR001938 -
Cpe19g00864 623 Pfam Thaumatin family 32 252 IPR001938 -
Cpe19g00864 623 Pfam Thaumatin family 330 539 IPR001938 -
Cpe19g00864 623 ProSitePatterns Thaumatin family signature. 88 104 IPR017949 -
Cpe19g00864 623 ProSiteProfiles Thaumatin family profile. 25 252 IPR001938 -
Cpe19g00864 623 Gene3D Thaumatin 26 252 IPR037176 -
Cpe19g00864 623 Gene3D Thaumatin 324 539 IPR037176 -
Cpe19g00864 623 PANTHER OS03G0233200 PROTEIN 320 557 IPR001938 -
Cpe19g00864 623 PANTHER OS03G0233200 PROTEIN 21 266 IPR001938 -
Cpe19g00864 623 PANTHER - 320 557 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00864 - - - dcr:108222866 676.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00790 Cpe-Chr8:6268652 Cpe19g00864 Cpe-Chr19:6375834 6.72E-41 dispersed
Cpe08g00923 Cpe-Chr8:7261778 Cpe19g00864 Cpe-Chr19:6375834 7.16E-79 dispersed
Cpe11g00261 Cpe-Chr11:1415211 Cpe19g00864 Cpe-Chr19:6375834 1.41E-78 dispersed
Cpe13g00169 Cpe-Chr13:1344053 Cpe19g00864 Cpe-Chr19:6375834 4.89E-34 dispersed
Cpe16g00307 Cpe-Chr16:4967629 Cpe19g00864 Cpe-Chr19:6375834 2.06E-85 dispersed
Cpe10g00668 Cpe-Chr10:3853700 Cpe19g00864 Cpe-Chr19:6375834 1.44E-83 wgd
Cpe11g00260 Cpe-Chr11:1408672 Cpe19g00864 Cpe-Chr19:6375834 1.23E-93 wgd
Cpe14g01026 Cpe-Chr14:8632746 Cpe19g00864 Cpe-Chr19:6375834 3.89E-89 wgd
Cpe16g00306 Cpe-Chr16:4963336 Cpe19g00864 Cpe-Chr19:6375834 1.17E-89 wgd
Cpe19g00864 Cpe-Chr19:6375834 Cpe02g00066 Cpe-Chr2:340568 5.20E-93 wgd
Cpe19g00864 Cpe-Chr19:6375834 Cpe07g00360 Cpe-Chr7:2326165 8.96E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015900 2 0 0 1 1 0 1 0 0 0 0 0 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 0 0 0 9
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00864 Cpe_Chr19 FPKM 5.754073 6.715262 8.415475 8.294892 10.959837 10.173802 12.020292 10.117366 10.146904 10.525292