Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00869 AATTCCACAATGCTGCAGGACATGTGGAACGCTCCTCCGGGCTTCAGGCCTTCCAAATCCGCCCCCTCTTCTCCGGCGAAGCCTCTCGGCATCTCCCGGCTCCGATCCGAGTCATTCCATGTCACTCACAAGGTTCCTGTCGGGGATACGCCCTACGTTAGGGCAAAGAATTTGGTGGATAAGGATCCGGATAAGGCGATTCCTCTCTTTTGGGCCGCCATTAATGCAGGGGACAGAGTTGATAGTGCCCTGAAAGATATGGCGATTGTTATGAAACAGCAGAATCGAGCCGAAGAAGCAATCGAAGCGATTAAATCGTTGCGAAGTCGGTGTTCCGATCAGGCTCAGGAGTCTCTGGATAATATTCTTCTGGATCTATACAAGAGATGTGGAAGGTTGGATGATCAGATAGCTCTATTGAAGCATAAACTATTGTTGATTCAACAAGGATTAGCGTTCAATGGGAAGAGAACAAAAACAGCCAGATCTCAAGGAAAGAAGTTCCAAGTCTCAGTTGAGCAAGAAGCAACTAGATTACTGGGTAATTTGGGATGGGCATTGATGCAGCACAACAACTACGTTGAAGCAGAAGATGCTTACAGGAAAGCACTCTCAATTGCACCGGATAATAACAAAATGTGCAACCTGGGAATCTGCTTGATGAAACAAGGAAGAATATCAGAGGCTAAAGAGAATCTACGAAGAGTAAAGCCAGCAGTGGCAGATGGGCCAAGAGGAACGGATTCCCATCTCAAAGCTTATGAAAGAGCACAACAGATGCTCCAAGATCTTTCGTCTGAGATGATGAATAGGGGCGGCGACAGGCTCGAACAGAGGCGGCTTTTCGACGCGTTTCTCGGTTCTTCGTCGATTTGGCAGCCTCAGCCTTGCAAGGATCAAGCAACAACAGCCTTGCCAGTCACAAATCCTAGTAGGGTTGTTATTCAAGATGATTTTGGTGATGAGAATATTGATATGAACTTGTTAGCAAACGCCCAGATGGTTCCTCCTCCTCCTCCTCCTCACCAACAATCACAGCAGAAATTTATCAAACAAGTTCAGATCCCTTTAGGGAATTCATTGAATATTGCAGCCCAGCCATTCTTCTCATCAAAATTTGTTAGTGAACCATCCATTACCAAAGTTCCTCCTATAGGAAACAACCAATTTCCTGAAGGTTTGAAGAGAACAAGGTCTGGAAATGCAGCCAGTTCAATGAGAGTGAGTGACATAGTGGAAATAAAAAGGCCATTTGTAGCTGAAACTAAGACAAGGTCATCATGTCCTCCTACTTCTGAGGAGACAGACAAACTGACAGCAATGTTGCCTGATGACAGTGACTTTGAAGAGGCTATTCTTGCTGCAGTTCTGGGCACAACCAATGAACCAGAGAAGAAAGCAGCAACCAATGCCAGGGATGTCGGCGGCGGCGGTGGCGGCGGCGGCATAATTCAGAGGAAAATTGAGAAGAGGCTTAAGGTTTTTCAAGACATTACACTTTCCTTGAGTCCGAGAGCGTGA 1521 46.29 NSTMLQDMWNAPPGFRPSKSAPSSPAKPLGISRLRSESFHVTHKVPVGDTPYVRAKNLVDKDPDKAIPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAIEAIKSLRSRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLLLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQHNNYVEAEDAYRKALSIAPDNNKMCNLGICLMKQGRISEAKENLRRVKPAVADGPRGTDSHLKAYERAQQMLQDLSSEMMNRGGDRLEQRRLFDAFLGSSSIWQPQPCKDQATTALPVTNPSRVVIQDDFGDENIDMNLLANAQMVPPPPPPHQQSQQKFIKQVQIPLGNSLNIAAQPFFSSKFVSEPSITKVPPIGNNQFPEGLKRTRSGNAASSMRVSDIVEIKRPFVAETKTRSSCPPTSEETDKLTAMLPDDSDFEEAILAAVLGTTNEPEKKAATNARDVGGGGGGGGIIQRKIEKRLKVFQDITLSLSPRA 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6397977 6399793 + Cp4.1LG19g08780.1 Cpe19g00869 486277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00869 506 MobiDBLite consensus disorder prediction 463 482 - -
Cpe19g00869 506 Gene3D Tetratricopeptide repeat domain 58 244 IPR011990 GO:0005515
Cpe19g00869 506 ProSiteProfiles TPR repeat profile. 177 210 IPR019734 GO:0005515
Cpe19g00869 506 SMART tpr_5 177 210 IPR019734 GO:0005515
Cpe19g00869 506 Coils Coil 90 117 - -
Cpe19g00869 506 SUPERFAMILY TPR-like 60 284 IPR011990 GO:0005515
Cpe19g00869 506 PANTHER PROTEIN POLLENLESS 3-LIKE 2 8 503 IPR044961 -
Cpe19g00869 506 PANTHER PROTEIN POLLENLESS 3-LIKE 2 8 503 - -
Cpe19g00869 506 MobiDBLite consensus disorder prediction 1 28 - -
Cpe19g00869 506 Pfam Tetratricopeptide repeat 179 210 IPR001440 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00869 - - - cpep:111781871 951.044
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01578 Cpe-Chr3:12205856 Cpe19g00869 Cpe-Chr19:6397977 2.27E-59 dispersed
Cpe09g00718 Cpe-Chr9:6540152 Cpe19g00869 Cpe-Chr19:6397977 4.32E-48 dispersed
Cpe15g00130 Cpe-Chr15:1047403 Cpe19g00869 Cpe-Chr19:6397977 2.03E-57 dispersed
Cpe19g00869 Cpe-Chr19:6397977 Cpe20g00571 Cpe-Chr20:3410260 3.54E-58 dispersed
Cpe10g00675 Cpe-Chr10:3892765 Cpe19g00869 Cpe-Chr19:6397977 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1144 . . . Bda10g00208 . . . . . . Cma03g00674 . Car03g00619 . . Cpe19g00869 . . . . . . . . . . . . . . . . . . . Lsi01g00585 . . . . Blo06g00290 . . . . . . . Cmo03g00698 . . . . . . . . . . . . . . . . . . . . . . . Chy02g00556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006467 2 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00869 Cpe_Chr19 FPKM 39.15432 40.636299 38.253387 36.628757 5.07689 5.886948 4.788157 7.964999 7.023768 11.191684