Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00880 ATGTTATCCAGCTTGATGAACCTTCTGAGGGCTTGCTGGTTGCCATCCTCGGACAATATCGTACACAGCAATTCGGATTCGGCAGGCCGTCGTGAAGGCCTACTATGGTACAAAGATCTTGGACATCACATGAATGGTGAATTTTCAATGGCTGTTGTCCAGGCTAATAACTTGCTTGAGGATCAGAGCCAGATCGAATCGGGTCCATTGAGCTTGCTCGAATCCGGGCCGTTCGGAACGTTTATTGGTGTCTATGATGGTCATGGTGGACCTGAAGCATCAAATTACATATATGACAATCTTTTCCAGCATTTGAAAAGGTTCACCACAGAACAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAGGAAGGGTTTATTTCGTTAGTGGCTAAACAATGGCAGATGAATCCCCAAATTGCAGCTGTTGGTTCATGCTGTCTGGTTGGTGTGATCTGTGGTGGCACCCTTTACATAGCCAATCTTGGCGATTCCCGTGCCGTACTGGGAAGGCTCGTTCAGGCGACCGAGGAGGTCGTTGCTGTTCAGCTATCAGCCGAGCATAATGTGAGCATAGAAGCTGTCAGAAGGGAGATGCAGTCTTTGCACCCAGATGACTCGCATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAAGGCTTAATGCAGGTTTCCAGATCTATAGGCGATGCATATCTAAAGAAGGCTGAATTCAACAGGGAGCCCTTGTATTCGAAGTTTAGGCTTCGCGAACCGTTCAATCGGCCAATATTGAGCTGTGAACCATCAATATCGATGCATGAACTTCGACCACAAGATCAATTCATCATATTTGCCTCTGATGGTCTGTGGGAGCACCTTAGCAATCAGCAGGCTGTGGATATTATTCGAACTCACCCACATCATGGAAGTGCTAAGAGATTGGTAAAAGCTGCTATGCAGGATGCAGCTAAGAAGCGAGAAATGCGATATTCAGATTTGAAGGACATCGACCGAGGTATCCGCCGTCATTTTCACGATGACATCACAGTCATAGTTGTATTTCTCGACTCGAATCTCGTGAGCAGAGCAAGCTCGGTCCGAGGCCCGACTACGTCTTTGAGAGGGAGGGGCGTTATCTTACCAAAAAAGTCTCTAGCTCTTTGTGCTCCACCTGCATAA 1179 46.23 MLSSLMNLLRACWLPSSDNIVHSNSDSAGRREGLLWYKDLGHHMNGEFSMAVVQANNLLEDQSQIESGPLSLLESGPFGTFIGVYDGHGGPEASNYIYDNLFQHLKRFTTEQQSMSSDVIKKAFQATEEGFISLVAKQWQMNPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLVQATEEVVAVQLSAEHNVSIEAVRREMQSLHPDDSHIVVLKHNVWRVKGLMQVSRSIGDAYLKKAEFNREPLYSKFRLREPFNRPILSCEPSISMHELRPQDQFIIFASDGLWEHLSNQQAVDIIRTHPHHGSAKRLVKAAMQDAAKKREMRYSDLKDIDRGIRRHFHDDITVIVVFLDSNLVSRASSVRGPTTSLRGRGVILPKKSLALCAPPA 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6451702 6454263 + Cp4.1LG19g08750.1 Cpe19g00880 486288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00880 392 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Cpe19g00880 392 PANTHER ALPHABET, ISOFORM E-RELATED 6 384 - -
Cpe19g00880 392 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Cpe19g00880 392 Pfam Protein phosphatase 2C 80 325 IPR001932 -
Cpe19g00880 392 SUPERFAMILY PP2C-like 56 356 IPR036457 -
Cpe19g00880 392 Gene3D - 37 365 IPR036457 -
Cpe19g00880 392 SMART PP2C_4 41 353 IPR001932 -
Cpe19g00880 392 CDD PP2Cc 48 355 IPR001932 -
Cpe19g00880 392 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 6 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00604 Cpe-Chr4:6319570 Cpe19g00880 Cpe-Chr19:6451702 1.90E-130 dispersed
Cpe15g00605 Cpe-Chr15:6773776 Cpe19g00880 Cpe-Chr19:6451702 3.11E-128 dispersed
Cpe16g00609 Cpe-Chr16:6698901 Cpe19g00880 Cpe-Chr19:6451702 1.47E-19 dispersed
Cpe17g00072 Cpe-Chr17:417449 Cpe19g00880 Cpe-Chr19:6451702 4.04E-149 dispersed
Cpe19g00351 Cpe-Chr19:3077215 Cpe19g00880 Cpe-Chr19:6451702 8.83E-37 dispersed
Cpe10g00688 Cpe-Chr10:3957063 Cpe19g00880 Cpe-Chr19:6451702 8.08E-157 wgd
Cpe14g01040 Cpe-Chr14:8734462 Cpe19g00880 Cpe-Chr19:6451702 0 wgd
Cpe16g00325 Cpe-Chr16:5096653 Cpe19g00880 Cpe-Chr19:6451702 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00880 K01102 - csv:101219696 703.36