Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00883 ATGGCGGAGAGTTCAGAAGAGGTCTATCTCCATGGCGATCTCGACCTCAAAATCTTCGAGGCCGTCCAGTTGCCTAATATGGATATAATATCGGAGCGTCTTCGTCGGTGCTTCACCGCCTGTGGTACTCTCGACTACTCTGCCATTAAATCCGTGGGAACCAACTCCCGTTCCGTCGACGAGGGGAAAGTCCACCGTGGTCATAGCAAAATCATCACCAGTGATCCATATGTTACCGTCCGGGTTCCTCAAGCCACCGTCGCACGGACTCGCGTGATAAAGAATTCCCAGAATCCCCATTGGAACGAGCATTTTGTTATCCCTCTTGCACAGAAAATGGCTGAAATAGAATTCCAGGTGAAAGACGACGATGTCTTTGGCGCTGAGGTTATGGGGACGGTCAAGTTCCCAGCTCGGCAAATTGTCTCTGGTTTGACCATTAGTGGGTGGTTTCCGGTGATTGGCTCCAATGGCAAGCCGCCGAAGCCTGACACGAAACTCCGAATCGAAATGAAGTTTACCTCGGTTGAGAAGAACCCGGCGTATCGTCATGGTATCGCCGGAGATCCAGAGCACAAGGGTGTGCGGCATACATATTTTCCTGTCAGGAAAGGGAGCTCCATGAGATTGTACCAAGATGCTCATGTGCCTGATGGGCTGCTGCCACAGATTGAATTGGATGGTGGGAAGGTTTTTAGACAAGGGAAATGTTGGGAGGATATTTGCCATGCTATAACAGAGGCTCATCATATGATATATATTGTCGGATGGTCTGTTTTTCATAAGGTGAGGCTGGTTAGAGAGCCGAGCAGGCCACTGCCCCGAGGCGGGGATTTGACTCTTGGTGAGCTGCTCAAATACAAATCAGAAGAGGGTGTTCGAGTTTTGTTGATGGTTTGGGATGATAAGACTTCTCATGACAAGTTCTTCATCAGCACGGAAGGATTGATGCAGACGCATGACGAGGAAACCTACAAATTTTTCAAGCATTCTTCTGTTATTTGTGTGCTTTCGCCTCGCTATCCGAGTGGCAAGCTAAGCTATGTGAAACAAAAGGTTGTAGGGACTGTCTTCACACACCATCAAAAGTGTGTCCTTGTTGATACTCAGGCATATGGTAATAATAGAAAGATAACTGCATTTCTTGGAGGTCTTGATCTCTGTGATGGTCGTTACGATACACCCGAGCATCGATTGTTTCGTGACCTCGACACAGTATTTAAGGAAGATTTTCACAATCCTGCAATTCCTCCTGGAACCAATGGTCCAAGGGAACCATGGCATGACTTGCACTGTCGGATCGATGGGCCAGCTGCATACGACTTGCTTATGAACTTTGAGCAACGTTGGAACAAAGCCACAAGATGGACAGAGTTTGGCCTACGGTGCAGGAGAATTACTCACTGGCATGATGCTTTAATAAAGATAGAGCGCATATCATGGATACTAAGCCCTAAACTAAGTATGTTACCGGATGGTTCAACAAAAGTTCCAGATGATGAACCTAATGTATATGTTTCGAAGGAAGAAGATCCCGAAAACTGGCATGTTCAGATTTTCCGATCCATCGACTCTGGATCAGTCAAAGGGTTTCCGAAAGATGCTCATCTTGCCGTGTCGCAGAATCTTGTATGTGCAAAAAACTTGGCTATAGAGAAAAGCATCGAAATGGCATATATCCAGGCTATCAGATCGGCGCAACATTTCATTTATATCGAAAATCAGTATTTTATCGGATCGTCGTATGGATGGCCAGGATATAAAAATGCTGGGGCTGATCATCTCATTCCCATGGAGTTGGCCCTTAAAATTGCGAGCAAAATTAGAGCCAAGGAAAGATTTGTTGTATATATTGTTATACCAATGTGGCCCGAGGGAGATCCGAATAGCGGTGCCATGCAAGAGATTCTTTATTGGCAGTCATCAGAGCAACCAGATTTGCACCCTCAAGACTATCTAAATTTCTACTGTCTTGGTAAACGCGAAGAAATTCCTGCAAATGGACCGAACATCGACAATGCAACGGCGTGTAATTCACTAAAACATAAACGGTTTATGATTTACGTTCACGCCAAGGGAATGATAGTAGATGATGAATATGTAATCATTGGGTCTGCTAATATCAACCAAAGATCTATGGCTGGGACAAAGGATACCGAGATAGCCACCGGCGCCTATCAGCCGCATCACACGTGGGCAAAGAAACAGAAACACCCACATGGTCAGATTTACGGGTATAGAATGTCGTTATGGAGCGAGCATCTCGGTATGCTCGATCCCATTTTTGAGGAGCCAAAAACTTTGGAATGTGTACGAAGAGTGAACAAGATTGCTGAGGATAACTGGAGGATATTTACAGCGGATGAATTCGCGACATTGCAAGGCCACCTTCTCAGGTATCCGTTGCTCGTCGACCGTGACGGGAAAGTCAGCTCTCTGCCTGGATATGAAAACTTCCCAGATGTTGGGGGGAAGATAATAGGGTCTCATTCAACTGCAATTCCTGATGTTCTGACCACTTAG 2523 45.98 MAESSEEVYLHGDLDLKIFEAVQLPNMDIISERLRRCFTACGTLDYSAIKSVGTNSRSVDEGKVHRGHSKIITSDPYVTVRVPQATVARTRVIKNSQNPHWNEHFVIPLAQKMAEIEFQVKDDDVFGAEVMGTVKFPARQIVSGLTISGWFPVIGSNGKPPKPDTKLRIEMKFTSVEKNPAYRHGIAGDPEHKGVRHTYFPVRKGSSMRLYQDAHVPDGLLPQIELDGGKVFRQGKCWEDICHAITEAHHMIYIVGWSVFHKVRLVREPSRPLPRGGDLTLGELLKYKSEEGVRVLLMVWDDKTSHDKFFISTEGLMQTHDEETYKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQAYGNNRKITAFLGGLDLCDGRYDTPEHRLFRDLDTVFKEDFHNPAIPPGTNGPREPWHDLHCRIDGPAAYDLLMNFEQRWNKATRWTEFGLRCRRITHWHDALIKIERISWILSPKLSMLPDGSTKVPDDEPNVYVSKEEDPENWHVQIFRSIDSGSVKGFPKDAHLAVSQNLVCAKNLAIEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADHLIPMELALKIASKIRAKERFVVYIVIPMWPEGDPNSGAMQEILYWQSSEQPDLHPQDYLNFYCLGKREEIPANGPNIDNATACNSLKHKRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIATGAYQPHHTWAKKQKHPHGQIYGYRMSLWSEHLGMLDPIFEEPKTLECVRRVNKIAEDNWRIFTADEFATLQGHLLRYPLLVDRDGKVSSLPGYENFPDVGGKIIGSHSTAIPDVLTT 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6467980 6474041 + Cp4.1LG19g08560.1 Cpe19g00883 486291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00883 840 Gene3D Endonuclease Chain A 229 465 - -
Cpe19g00883 840 SUPERFAMILY Phospholipase D/nuclease 552 765 - -
Cpe19g00883 840 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 356 391 IPR001736 GO:0003824
Cpe19g00883 840 ProSiteProfiles C2 domain profile. 1 151 IPR000008 -
Cpe19g00883 840 SUPERFAMILY Phospholipase D/nuclease 201 459 - -
Cpe19g00883 840 Pfam Phospholipase D Active site motif 686 712 IPR001736 GO:0003824
Cpe19g00883 840 Pfam Phospholipase D Active site motif 356 391 IPR001736 GO:0003824
Cpe19g00883 840 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 175 IPR035892 -
Cpe19g00883 840 SMART pld_4 356 391 IPR001736 GO:0003824
Cpe19g00883 840 SMART pld_4 685 712 IPR001736 GO:0003824
Cpe19g00883 840 Gene3D Endonuclease Chain A 524 737 - -
Cpe19g00883 840 Pfam C2 domain 12 153 IPR000008 -
Cpe19g00883 840 Gene3D C2 domain 11 184 IPR035892 -
Cpe19g00883 840 PANTHER PHOSPHOLIPASE D 5 840 IPR015679 -
Cpe19g00883 840 CDD C2_plant_PLD 8 174 - -
Cpe19g00883 840 PIRSF PLD_plant 1 840 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cpe19g00883 840 SMART C2_3c 13 150 IPR000008 -
Cpe19g00883 840 Pfam Phospholipase D C terminal 761 829 IPR024632 -
Cpe19g00883 840 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 685 712 IPR001736 GO:0003824
Cpe19g00883 840 PANTHER PHOSPHOLIPASE D DELTA 5 840 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00003 Cpe-Chr12:10623 Cpe19g00883 Cpe-Chr19:6467980 0 dispersed
Cpe17g00327 Cpe-Chr17:2226890 Cpe19g00883 Cpe-Chr19:6467980 0 dispersed
Cpe17g00574 Cpe-Chr17:4702323 Cpe19g00883 Cpe-Chr19:6467980 0 dispersed
Cpe10g00694 Cpe-Chr10:3992957 Cpe19g00883 Cpe-Chr19:6467980 0 wgd
Cpe11g00275 Cpe-Chr11:1476758 Cpe19g00883 Cpe-Chr19:6467980 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00883 K01115 - csv:101217251 1550.8