Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00893 ATGGCTCGACGATCCGTTCCCATCATCAAGCAGCTCCTCTCCAAATCCAGCTCTTCCGAAAATCCAGCCCTTTTGTCTTCATGTTTCAAATCCAAAATCGATGCTCAAAATCGATCCGTCACTTACATGCCCCGACCAGGAGACGGCGCTCCGAGAGGCGTGACCTTGATTCCCGGAGATGGAATCGGTCCCTTGGTTACTGGTGCAGTGGAGCAAGTCATGGATGCGATGCACGCCCCTGTTTATTTTGAAAAGTTTGAGGTTCATGGCGACATGAAGAAGGTGCCTCAAGAAGTAATGGACTCGATTAAGAGGAATAAGGTGTGTTTGAAGGGAGGTTTGGTGACTCCTGTTGGCGGCGGTGTGAGTTCGCTTAATGTTCAGCTGAGGAAAGAGCTTGATCTTTATGCGTCGCTTGTCAATTGCTTTAATCTCCCCGGGCTTCCTACCAGGCACGAGAACGTGGATATTGTTGTGATTAGGGAAAATACAGAGGGTGAATACTCTGGTTTGGAGCACGAGGTCGTTCCTGGAGTTGTGGAAAGCCTTAAGGTGATAACAAAGTTCTGTTCTGAGCGTATTGCTAAATATGCTTTTGAGTATGCTTACCTCAACAACAGAAAGAAAGTTACTGCTGTGCACAAAGCAAATATCATGAAACTTGCTGATGGTCTCTTTCTGGAATCTTGTCGAGAGGTCGCCACAAAGTATCCTGGGATAAAGTACAATGAAGTTATTGTAGACAATTGCTGCATGCAACTGGTCTCAAAGCCTGAGCAATTTGATGTGACACCCAATCTATACGGAAATCTGGTGGCAAACACAGCTGCTGGTATAGCTGGTGGCACAGGAGTTATGCCGGGAGGAAATGTTGGTGCCGACCACGCTGTTTTTGAGCAAGGAGCTTCAGCAGGAAATGTGGGGAATGATAGGATAGTGGAACAAAAGAAGGCAAACCCGGTAGCGCTGCTCTTATCATCTGCCATGATGCTGAGACATCTCCAGTTTCCATCTTTTGCCGATCGATTAGAAACAGCCGTGAAGAAGGTGATTTTCGAAGGCAAGTACCGAACCAAGGACCTCGGAGGACAGAGCACGACGCAGGAGGTTGTCGATGCAGTCATAGCTGCTTTAGATTGA 1140 47.46 MARRSVPIIKQLLSKSSSSENPALLSSCFKSKIDAQNRSVTYMPRPGDGAPRGVTLIPGDGIGPLVTGAVEQVMDAMHAPVYFEKFEVHGDMKKVPQEVMDSIKRNKVCLKGGLVTPVGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEVIVDNCCMQLVSKPEQFDVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNDRIVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKKVIFEGKYRTKDLGGQSTTQEVVDAVIAALD 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6515430 6519097 - Cp4.1LG19g08450.1 Cpe19g00893 486301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00893 379 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 31 377 - -
Cpe19g00893 379 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 51 377 IPR004434 GO:0006099
Cpe19g00893 379 Gene3D Isopropylmalate Dehydrogenase 42 378 - -
Cpe19g00893 379 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 31 377 - -
Cpe19g00893 379 SMART Iso_dh_2 53 374 IPR024084 -
Cpe19g00893 379 Pfam Isocitrate/isopropylmalate dehydrogenase 54 374 IPR024084 -
Cpe19g00893 379 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 53 378 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00358 Cpe19g00893 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01341 Cpe-Chr5:9439065 Cpe19g00893 Cpe-Chr19:6515430 0 dispersed
Cpe19g00416 Cpe-Chr19:3772308 Cpe19g00893 Cpe-Chr19:6515430 5.35E-114 dispersed
Cpe10g00710 Cpe-Chr10:4064422 Cpe19g00893 Cpe-Chr19:6515430 3.51E-116 wgd
Cpe16g00346 Cpe-Chr16:5237850 Cpe19g00893 Cpe-Chr19:6515430 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00893 K00030 - csv:101214612 699.508