Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00895 ATGCGATTTTGCTTCCACCATCTCCTTCTTCGTTCTGGGGCTGTTTCTGTTCTCTGTTCACCGGAATCAATGGCGTTTTCCGACGAGAACAATCCCAACTTGATGATCAAACCCACTGGGTTTCTTCCAGGAGGAGGGTTGGAGAACAGAGGGAGGGCTTTTGGGCAGGAGATTAGTAGAACTAATAATCGAAGAGCTCTTAATGATATCAATCAGAATTATCAAGCTTACCCTTGTGTTGTTAACAAGAGAGCTCTCTCAGGGAAGCAAGAAATCTATGAGAAAAAGCAGGTTGATCCATTTCATAGACCGATTACGAGGAAGTTTGCAGCTCAGATTGCTAGTAGTCAACAGCTTCATCAGCCACAAGGAACTAATAAGCCTAACTCATTTCTTTCAAACTCAAATGCGTTTGGACATTCCATATTTGTAGACGAGGATTGCAAAACACTAGAAAATGATCATCCAGTTCCCATGTTCTTGGAGAAACCAGAACCATCATCATTGTCTCAGGAAGCAACCCAAATGGCGGAGGTTGAAATGGAGGATATCACAGATGAACATGACGACCCGGTAATTGATATCGATGGTGTCGATTCCACAAACCCGCTTGCCGTTGTCGATTATGTCGATGATCTCTATGCACACTACAGAAAACTAGAGAATTCGAGCTGTGTTTCCCCGAATTACATGACGAAACAATTCGACATTAATGAGAAAATGAGAGCTATACTGATCGACTGGCTTATAGAGGTGCACGACAAGTTTGATCTCATCGGAGAAACATTGTTTCTCACTGTGAATCTGATAGACAGATTCTTGTCGCAAAAAACAGTTGTGAGGAAGAAACTTCAGCTGGTTGGTTTGGTTTCTATGCTCTTAGCTTGCAAATATGAAGAAGTTTCTGTCCCTGTTGTCGGAGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAAAAGAAGTTCTTGAAATGGAGACAGTGATGCTCAACTGTCTGCAGTTCAATATGTCGGTTCCGACACCCTTTGTGTTCCTCCGAAGGTTCCTTAAAGCAGCTCAATCTAACAAAAAGCTTGAGCTATTGGCGTTCTTCTTGATCGAGCTCTCGCTCGTGGAGTATGAAATGCTGCGATTCCCGCCCTCTCTGCTGGCGGCGGCAGCGACTTACACAGCTCAATGTACTCTCACCGGAGTCAAGGGGTGGAGCCGGACATGCCAGTGGCATTCTAGCTACTCGGAAGATCAGCTACTAGAATGCTCGAGACTGATGGTGGGGTTCCATCAGAGAGCGGCGACAGGGAAGCTCACCGGGGTTCATCGGAAGTACTGTACATCGAAATTTAACTACACGGCGAAATGTGAACCTGCACATTTTCTTTTGCAGACTCTGCAATAG 1398 44.49 MRFCFHHLLLRSGAVSVLCSPESMAFSDENNPNLMIKPTGFLPGGGLENRGRAFGQEISRTNNRRALNDINQNYQAYPCVVNKRALSGKQEIYEKKQVDPFHRPITRKFAAQIASSQQLHQPQGTNKPNSFLSNSNAFGHSIFVDEDCKTLENDHPVPMFLEKPEPSSLSQEATQMAEVEMEDITDEHDDPVIDIDGVDSTNPLAVVDYVDDLYAHYRKLENSSCVSPNYMTKQFDINEKMRAILIDWLIEVHDKFDLIGETLFLTVNLIDRFLSQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMETVMLNCLQFNMSVPTPFVFLRRFLKAAQSNKKLELLAFFLIELSLVEYEMLRFPPSLLAAAATYTAQCTLTGVKGWSRTCQWHSSYSEDQLLECSRLMVGFHQRAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTLQ 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6525694 6528447 - Cp4.1LG19g08530.1 Cpe19g00895 486303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00895 465 SMART Cyclin_C_2 340 457 IPR004367 -
Cpe19g00895 465 PANTHER CYCLIN-B2-1 52 460 - -
Cpe19g00895 465 Gene3D - 226 338 - -
Cpe19g00895 465 SUPERFAMILY Cyclin-like 201 337 IPR036915 -
Cpe19g00895 465 SMART cyclin_7 344 426 IPR013763 -
Cpe19g00895 465 SMART cyclin_7 247 331 IPR013763 -
Cpe19g00895 465 PIRSF Cyclin_A_B_D_E 46 465 IPR039361 -
Cpe19g00895 465 Pfam Cyclin, C-terminal domain 340 455 IPR004367 -
Cpe19g00895 465 Pfam Cyclin, N-terminal domain 212 338 IPR006671 -
Cpe19g00895 465 ProSitePatterns Cyclins signature. 242 273 IPR006671 -
Cpe19g00895 465 SUPERFAMILY Cyclin-like 339 457 IPR036915 -
Cpe19g00895 465 CDD CYCLIN 338 425 IPR013763 -
Cpe19g00895 465 CDD CYCLIN 241 330 IPR013763 -
Cpe19g00895 465 Gene3D - 212 452 - -
Cpe19g00895 465 PANTHER CYCLINS 52 460 IPR039361 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00246 Cpe-Chr19:2009694 Cpe19g00895 Cpe-Chr19:6525694 1.79E-80 dispersed
Cpe19g00247 Cpe-Chr19:2025317 Cpe19g00895 Cpe-Chr19:6525694 5.37E-81 dispersed
Cpe19g00895 Cpe-Chr19:6525694 Cpe20g00001 Cpe-Chr20:590 2.77E-82 dispersed
Cpe10g00711 Cpe-Chr10:4071282 Cpe19g00895 Cpe-Chr19:6525694 0 wgd
Cpe19g00895 Cpe-Chr19:6525694 Cpe02g00037 Cpe-Chr2:201461 4.65E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00895 K21777 - csv:101216622 765.377