Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00897 ATGTACGGACCTAGAGGGGCAATGTTGGGAAGCGGGGGGGTTTCGGATGGGTACGAAGTCGGCTCAAAAAGACAAAGAATGATGGAACCGAATCCCTACTTCGCAGTTAGCAGCAGCACTGTCGGATTTCAACCATATGGCTATGGGAGTTTTCCTCCTACTCATGCCTTTCCTGTGGTTCGCCTTAGAGGGCTTCCCTTCAACTGCTCTGACATTGACATTTTCAAGTTCTTTGCTGGACTGGACATTGTGGATGTGCTACTGGTCAACAAGAATGGGCGGTTCATGGGAGAGGCCTTTGTTGTCTTCGCAGGCTCTGTGCAAGTTGAGTTCGCATTGCAACGGGATCGACAAAATATGGGGCGTAGGTACGTAGAAGTCTTCAGGTGCAAAAGGCAGGATTATTATAATGCCATTGCTGCTGAAGTAAACTACGAGGGCATTTATGATAACGACTACCATGGAAGTCCTCCTCCTCGACAAAAGAGGTTCAGCGACAAGGACCAGATGGAATACACTGAGATACTGAAGCTGCGTGGTCTGCCTTTCTCTGTGAAAAAATCCGACATTATTGAGTTTTTTGGAGAGTTTGACCTCGCTGAAGATAGGATACATATTGCAAGCCGTCCAGATGGGAAGGCTACTGGTGAGGCTTACGTTGAGTTTGCTTCAGAAGAGGAGGCAAAGAGAGCAATGAGTAAGGACAAGATGACAATTGGGTCGAGATATGTGGAGTTGTTTCCTTCAACCTCAAATGAGGCTAGAAGAGCTGAGTCAAGGTCAAGACAGTGA 792 47.35 MYGPRGAMLGSGGVSDGYEVGSKRQRMMEPNPYFAVSSSTVGFQPYGYGSFPPTHAFPVVRLRGLPFNCSDIDIFKFFAGLDIVDVLLVNKNGRFMGEAFVVFAGSVQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAIAAEVNYEGIYDNDYHGSPPPRQKRFSDKDQMEYTEILKLRGLPFSVKKSDIIEFFGEFDLAEDRIHIASRPDGKATGEAYVEFASEEEAKRAMSKDKMTIGSRYVELFPSTSNEARRAESRSRQ 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6539530 6542210 - Cp4.1LG19g08500.1 Cpe19g00897 486305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00897 263 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 1 263 - -
Cpe19g00897 263 SUPERFAMILY RNA-binding domain, RBD 173 260 IPR035979 GO:0003676
Cpe19g00897 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 251 IPR000504 GO:0003723
Cpe19g00897 263 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 263 - -
Cpe19g00897 263 CDD RRM_hnRNPH_ESRPs_RBM12_like 175 247 - -
Cpe19g00897 263 SUPERFAMILY RNA-binding domain, RBD 52 137 IPR035979 GO:0003676
Cpe19g00897 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 123 IPR000504 GO:0003723
Cpe19g00897 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 244 IPR000504 GO:0003723
Cpe19g00897 263 Gene3D - 159 263 IPR012677 -
Cpe19g00897 263 SMART rrm1_1 59 128 IPR000504 GO:0003723
Cpe19g00897 263 SMART rrm1_1 175 247 IPR000504 GO:0003723
Cpe19g00897 263 Gene3D - 56 141 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00897 K12898 HNRNPF_H; heterogeneous nuclear ribonucleoprotein F/H - csv:101213884 502.671
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00714 Cpe19g00897 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00879 Cpe-Chr16:8310083 Cpe19g00897 Cpe-Chr19:6539530 4.23E-77 dispersed
Cpe16g00880 Cpe-Chr16:8316952 Cpe19g00897 Cpe-Chr19:6539530 1.14E-80 dispersed
Cpe19g00897 Cpe-Chr19:6539530 Cpe16g00115 Cpe-Chr16:2490541 9.92E-07 dispersed
Cpe10g00714 Cpe-Chr10:4085903 Cpe19g00897 Cpe-Chr19:6539530 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1192 . . . . . . . Bma15g00888 . . Cma03g00623 Cma07g00385 Car03g00578 Car07g00337 . Cpe19g00897 Cpe10g00714 . . . . . . . . . . . . . . . Cone12ag0866 . . Lsi01g00530 . . . . Blo06g00274 . . Bpe10g00194 . . . . . Cmo07g00378 . . . . . . . . . . . . . . . . . . . . . . Chy02g00506 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005883 2 2 1 1 2 1 2 1 1 1 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00897 Cpe_Chr19 FPKM 0.0 0.0 7.546859 7.970288 0.0 0.0 0.0 17.280617 17.52038 16.297855