Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00900 ATGAGGATTATATGCATTCTAGTATTGATGCTTCTCTCCAGTGGGAGTTCCTCAATTGGAGATAGCAGAAATGTATCCACGAGGCCTGATGTTGTCAACATTGGGGCTTTATTCTCTTTCCATTCTATGATAGGAAAAGTTGGAAAAATCGCGGTAGAAGCTGCCATCGAGGACGTGAATTCAGATCCATCCGTTCTTGGGGGGACGAAGCTGAATCTCACTTTACATGATACCAATTACAGTGGATTTTTGGGCATCGTTGAGTCCTTGCGTTTTATGGAGACGAAGACCGTGGCCATAATTGGCCCCCAAAACTCTGTAACTGCTCATGTGATATCTCATATTGCAAATGAGCTCCAAGTTCCTCTGTTGTCGTTTTCGGCGACAGATCCTACACTGTCATCACTTCAGTTTCCTTTCTTTATCAGAACGTCACAGAACGATCGGTATCAGATGGCTGCAGTAGCTGCAATAGTAGACTACTTTGAATGGAGAGAAGTGGTTGCCATCTTTGTTGATGATGACCATGGTAGAAATGGTATTGCTGCATTGGGGGATCAACTTAACGAGAAACGATGTAAGATCTCAGTCAAAGTACCATTGAAGCCTGATGCGAGTCGAGACGAGGTCACTAATGCACTTGTTAAGGTGACTTTAACCACGTCTCGAATACTTGTTGTTCACACTTATGAGTCCACAGGTATGGTGGTGCTCAATGTAGCTCAACATCTTGGATTGACTGGACCTGGCTATGTATGGATAGCCACAAACTGGCTTTCTTTGCTACTCGACACGAATTCTACTCGTCCTCCTGGTTCTATGGAAAGTATTCAAGGACTTATTGCTTTGCGTCTTTATACTCCAAATTCTGCACTCAAAAGGAAATTTGTTTCTAGGTGGACGAATTTGACTAATGGAAAGTCGTCGAGCGGCCAACTCGGATTGAGTACTTACGGATTATATGCGTATGATACTGTATGGATGCTTGCTCATGCAATCAACTCATTTCTTAATGAAGGTGGAAATCTTTCATTTTCAAATCTTTCCAAGTTAACTTGGGCTGATGTTGGAGCTTTGAATTTGAATGCCATGAGCGTCTTCAATGGTGGGAGGGCACTACTACAGAATATTTTAGACGTAAATTTCACTGGAATAACAGGTCCAGTTGAGTTCACTCCAGACCGGGACTTGATTCGCCCTGCGTTCGAAGTGATCAATATTATCGGCTCAGGGGAAAGGCGAATTGGTTACTGGTCTAACTATTCTGGCTTATCCATTGTGCCTCCTGAAACCCTTTACTCAAAACCACCTAATGGATCCAGTTTAAATCAAAAGCTATATGATGTGGTATGGCCAGGACAAGCAGCAACGAAGCCTCGTGGGTGGGCGTTTCCGAACGGTGGAGGGCATTTGAGAATCGGTGTCCCAAGACGAGTCAGTTACCAAGAATTTGTCTCACAAGTAGAAGGAACTGACATGTTCAGTGGCTACTGCATTGATGTCTTCACTGCAGCAATTAACTTGTTGCCTTATACGGTCCCTTACAAGTTAATTGCTTATGGGGATGGTGTTACTAATCCAAGAACAACCGAGCTTGTTCGCGTAGTTGTTTGGATTTTGGAGCATAGGATTAATGATGATTTTCGTGGCCCTCCGAAGAGACAAGTTATTACTATTCTGTGGTTCAGCTTCTCAACTATGTTCTTTTCTCATCGGGAAAACACGGTCAGTACCCTCGGTCGCCTCGTGCTGCTCATATGGTTATTTGTTGTTCTTATTATAAACTCGAGCTACACTGCAAGCTTGACCTCTATCCTTACAGTTCAACAACTCTCTTCTTCTGTCAAAGGCATTGAAACTTTGGTTTCAAACAATGACCCAATTGGGTACCAGCAGGGTTCGTTTACTCGAAACTACTTGATTGAGGAACTTGGCATTCACGAATCGAGACTCGTTCCACTAATCTCAATAGAACATTATGTTAAAGCCTTGAATGATGGTCCACAGAAGAATGGTGTTGCTGCTATTGTCGACGAGCGATCGTATGCCGAGCTCTTCCTTTCAACTCATTGCGAATTCAGTATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTGCTTTCCAGCGCGACTCTCCTTTAGCAGTTGACATGTCGACTGCTATTCTACAACTGTCCGAAAATGGGGATCTTCAAAGAATCCATGATAAATGGTTAATGAAAAGTGCTTGCACATCACAAGTCTCCAAATTTGAGGTGGATCGACTTCAGCTCGATAGCTTTTGGGGACTTTTTCTAATATGTGGATTAGCCTGCTTGCTCGCTCTAGCGATATATGTCTTTCAAATGTTGCGCCAATACAGCAAGCATTACTCAGAAGAACTTGAATCTTCTGAGCAAACCTCTCGATCTCGATCTAAAAGCCTGCATAGATTTCTTTCTTTTGCAGATGAAAAGGAAGATGTCTTTAGGAGTCGATCCAAGCGACGACAGATGCAGGAGGCTTCAGTTAGAAACATGAATGGAGATAATTCAGCAGGCAGTTCAAGAAAATATGACAATTGTGATGCTGATGGTACGTATTGA 2589 43.03 MRIICILVLMLLSSGSSSIGDSRNVSTRPDVVNIGALFSFHSMIGKVGKIAVEAAIEDVNSDPSVLGGTKLNLTLHDTNYSGFLGIVESLRFMETKTVAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDRYQMAAVAAIVDYFEWREVVAIFVDDDHGRNGIAALGDQLNEKRCKISVKVPLKPDASRDEVTNALVKVTLTTSRILVVHTYESTGMVVLNVAQHLGLTGPGYVWIATNWLSLLLDTNSTRPPGSMESIQGLIALRLYTPNSALKRKFVSRWTNLTNGKSSSGQLGLSTYGLYAYDTVWMLAHAINSFLNEGGNLSFSNLSKLTWADVGALNLNAMSVFNGGRALLQNILDVNFTGITGPVEFTPDRDLIRPAFEVINIIGSGERRIGYWSNYSGLSIVPPETLYSKPPNGSSLNQKLYDVVWPGQAATKPRGWAFPNGGGHLRIGVPRRVSYQEFVSQVEGTDMFSGYCIDVFTAAINLLPYTVPYKLIAYGDGVTNPRTTELVRVVVWILEHRINDDFRGPPKRQVITILWFSFSTMFFSHRENTVSTLGRLVLLIWLFVVLIINSSYTASLTSILTVQQLSSSVKGIETLVSNNDPIGYQQGSFTRNYLIEELGIHESRLVPLISIEHYVKALNDGPQKNGVAAIVDERSYAELFLSTHCEFSIVGQEFTKNGWGFAFQRDSPLAVDMSTAILQLSENGDLQRIHDKWLMKSACTSQVSKFEVDRLQLDSFWGLFLICGLACLLALAIYVFQMLRQYSKHYSEELESSEQTSRSRSKSLHRFLSFADEKEDVFRSRSKRRQMQEASVRNMNGDNSAGSSRKYDNCDADGTY 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6550892 6556588 + Cp4.1LG19g08570.1 Cpe19g00900 486308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00900 862 MobiDBLite consensus disorder prediction 824 862 - -
Cpe19g00900 862 PANTHER GLUTAMATE RECEPTOR 3.6 13 535 - -
Cpe19g00900 862 Pfam Bacterial extracellular solute-binding proteins, family 3 598 740 IPR001638 -
Cpe19g00900 862 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 322 334 - -
Cpe19g00900 862 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Cpe19g00900 862 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Cpe19g00900 862 SUPERFAMILY Periplasmic binding protein-like I 28 462 IPR028082 -
Cpe19g00900 862 Gene3D - 50 399 - -
Cpe19g00900 862 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 535 - -
Cpe19g00900 862 SUPERFAMILY Periplasmic binding protein-like II 449 743 - -
Cpe19g00900 862 PIRSF IGluLR_plant 532 860 IPR017103 -
Cpe19g00900 862 PIRSF IGluLR_plant 1 536 IPR017103 -
Cpe19g00900 862 Pfam Ligand-gated ion channel 532 773 IPR001320 GO:0015276|GO:0016020
Cpe19g00900 862 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 534 852 - -
Cpe19g00900 862 Gene3D - 529 634 - -
Cpe19g00900 862 SMART GluR_14 472 742 IPR001320 GO:0015276|GO:0016020
Cpe19g00900 862 Gene3D - 674 702 - -
Cpe19g00900 862 Pfam Receptor family ligand binding region 50 409 IPR001828 -
Cpe19g00900 862 Gene3D - 147 424 - -
Cpe19g00900 862 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Cpe19g00900 862 PANTHER GLUTAMATE RECEPTOR 3.6 534 852 - -
Cpe19g00900 862 MobiDBLite consensus disorder prediction 835 852 - -
Cpe19g00900 862 Gene3D - 703 739 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00445 Cpe-Chr16:5732335 Cpe19g00900 Cpe-Chr19:6550892 1.47E-121 dispersed
Cpe19g00900 Cpe-Chr19:6550892 Cpe16g00443 Cpe-Chr16:5718124 1.36E-101 dispersed
Cpe10g00717 Cpe-Chr10:4100639 Cpe19g00900 Cpe-Chr19:6550892 0 wgd
Cpe19g00900 Cpe-Chr19:6550892 Cpe02g00025 Cpe-Chr2:134377 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00900 K05387 - jre:108983671 1071.61