Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00902 ATGTTGCTGGTTTATTACCTGTGTTTGAGTTTGTTGTGGGGCAAATCGTTGGCGGCTCCTGCCGGCGGCGATGGCACCACGAGGGAGCTTGATCAGACTCCGACATGGGCTGTTGCTGGTGTTTGTGCTGTTATCATCATTATTTCTATCACCTTGGAGAAACTCCTTCATAAAGCTGGAACGTGGCTTACAGATAAGCATAAGAGAGCTCTTTATGAAGCTCTGGAGAAGGTTAAAGCTGAGCTGATGATTCTGGGCTTCATTTCACTGCTCCTCACCTTTGGCCAGAGCTACATCATTAAAATCTGCATTCCCACAGGGGTTGCAAACACTATGTTACCGTGTGCAGCAGCTAAGGATGACAAAATGGAAAAGGATGCTGGCGGAGCCGATGAAGGTGAGCATCATCGACGACTTCTATGGTATGAACGGAGGTACCTGGCTGCTGTTGGCCCTGTTAGTTGCAAGGATGATCATGTGCCGCTTATATCTATCTCAGGATTGCATCAGCTGCACTTGTTTATCTTCTTCTTAGCTGTATTTCATGTAGTATACAGCGCCATCACAATGATGCTTGGGAGACTAAAGATTCGAGGTTGGAAGGCATGGGAGGAGGAGACCTCAACTCACAATTATGAGTTCTCAAATGATAATGCACGATTCAGGCTTACTCACGAGACATCATTTGTGAGAGCCCACACGAGCTTTTGGGCAAAACTTCCTGTCTTTTTTTACATTGGATGCTTCTTCCGACAATTTTTCAGGTCCGTTGGTAAGGCTGACTACTTGGCATTACGCAATGGATTCATCGCCGTTCATCTAGCTCCGGGAAGTAAGTTTGACTTCCAAAAATATATTAAAAGGTCCTTAGAAGATGACTACAAGATTATTGTGGGAGTGAGTCCCGTGCTTTGGGCATCGTTCGTCGTCTTCTTACTTATAAACGTTTATGGATGGCAGGCATTGTTTTGGACATCCTTAATCCCTGTGATTATAATCCTGGCTGTTGGAACAAAGCTTCAGGGAGTTATGACAAACATGGCTCTTGAAATTACAGAAAGACATGCTGTTGTCCAAGGAATTCCTCTTGTTCAGGCATCAGATAAATATTTTTGGTTTGGCAAGCCTCAGCTGGTTCTTTATCTCATCCACTTCGCTTTATTTTCGAATGCATTCCAAATAACGTATTTCTTCTGGATTTGGTATTCGTTCGGGCTAAAATCCTGCTTCCATACTGATTTCAAGCTCGCAATTATAAAAATCGGTCTCGGGGTTGGTGTTCTTTGTCTTTGCAGCTACATTACTCTTCCACTATATGCTCTTGTGACTCAGATGGGCACACGTATGAAGAAGTCAATCTTTGATGAACAAACATCAAAGGCACTCAAAAAGTGGCGCATGGCTGTTAAGAAGAAGCAAGGAAAGTCCCCAACTCGAAAACTCGGTAGCCCGAGCGCTTCGCCGATGCATTCATCATCAGGATACACATTGCATCGTTTCAAGACCACAGGTCACTCAAACGGATCATCCATGTACGACGAGAACGAGGCATCGGATTACGAAGTAGATCCCGTGTCGCCTAAAACACCGGCTGCAAATTTTACAGTTAGAGTAGACGCTGGTGATGGACATGAGAACGAAATAATGGAATCCCAGCATTCAGAAAGAAGGAATGAAGATGATTTCTCATTTGCCAAACCTGCACCCACCAAAGGCTCTGCTTAA 1725 44.46 MLLVYYLCLSLLWGKSLAAPAGGDGTTRELDQTPTWAVAGVCAVIIIISITLEKLLHKAGTWLTDKHKRALYEALEKVKAELMILGFISLLLTFGQSYIIKICIPTGVANTMLPCAAAKDDKMEKDAGGADEGEHHRRLLWYERRYLAAVGPVSCKDDHVPLISISGLHQLHLFIFFLAVFHVVYSAITMMLGRLKIRGWKAWEEETSTHNYEFSNDNARFRLTHETSFVRAHTSFWAKLPVFFYIGCFFRQFFRSVGKADYLALRNGFIAVHLAPGSKFDFQKYIKRSLEDDYKIIVGVSPVLWASFVVFLLINVYGWQALFWTSLIPVIIILAVGTKLQGVMTNMALEITERHAVVQGIPLVQASDKYFWFGKPQLVLYLIHFALFSNAFQITYFFWIWYSFGLKSCFHTDFKLAIIKIGLGVGVLCLCSYITLPLYALVTQMGTRMKKSIFDEQTSKALKKWRMAVKKKQGKSPTRKLGSPSASPMHSSSGYTLHRFKTTGHSNGSSMYDENEASDYEVDPVSPKTPAANFTVRVDAGDGHENEIMESQHSERRNEDDFSFAKPAPTKGSA 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6561344 6566595 + Cp4.1LG19g08380.1 Cpe19g00902 486310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00902 574 PANTHER MLO-LIKE PROTEIN 1 20 563 IPR004326 GO:0006952|GO:0016021
Cpe19g00902 574 MobiDBLite consensus disorder prediction 478 514 - -
Cpe19g00902 574 MobiDBLite consensus disorder prediction 540 564 - -
Cpe19g00902 574 PANTHER MLO-LIKE PROTEIN 20 563 - -
Cpe19g00902 574 MobiDBLite consensus disorder prediction 468 574 - -
Cpe19g00902 574 Pfam Mlo family 28 492 IPR004326 GO:0006952|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00902 K08472 MLO; mlo protein - csv:101212923 998.423
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00718 Cpe19g00902 CCT
Cpe10g00718 Cpe19g00902 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01280 Cpe-Chr8:9245538 Cpe19g00902 Cpe-Chr19:6561344 0 dispersed
Cpe10g00169 Cpe-Chr10:1012546 Cpe19g00902 Cpe-Chr19:6561344 1.09E-122 dispersed
Cpe12g00039 Cpe-Chr12:208190 Cpe19g00902 Cpe-Chr19:6561344 1.22E-118 dispersed
Cpe13g00919 Cpe-Chr13:7798528 Cpe19g00902 Cpe-Chr19:6561344 7.24E-117 dispersed
Cpe16g00545 Cpe-Chr16:6302630 Cpe19g00902 Cpe-Chr19:6561344 1.30E-115 dispersed
Cpe17g00281 Cpe-Chr17:1879666 Cpe19g00902 Cpe-Chr19:6561344 6.91E-136 dispersed
Cpe19g00902 Cpe-Chr19:6561344 Cpe20g00762 Cpe-Chr20:6767263 4.26E-125 dispersed
Cpe01g00481 Cpe-Chr1:2772563 Cpe19g00902 Cpe-Chr19:6561344 1.45E-55 transposed
Cpe11g00780 Cpe-Chr11:6313467 Cpe19g00902 Cpe-Chr19:6561344 1.64E-162 transposed
Cpe10g00718 Cpe-Chr10:4105882 Cpe19g00902 Cpe-Chr19:6561344 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g152 . . Bda02g00508 . . Bpe01g00450 . . . . Cma03g01297 Cma07g00379 . Car07g00331 . . Cpe10g00718 Bhi03g00355 Tan03g2523 . . . . . Cla01g02044 Cam01g2152 Cec04g1809 Cco04g1876 Clacu01g2168 Cmu01g2043 Cre04g1720 . Cone5ag1684 . . Lsi01g00525 Csa06g03661 . Cme08g00265 . Blo14g00412 . . . . . Bma11g00425 . Cmo03g00647 Cmo07g00374 . . . . Cpe19g00902 . . . . . . . . . . . . . . . . . Chy02g00500 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe13g00919 . 2 557 MLO family AT5G53760 69.2 1.6e-215 746.1
Cpe06g00699 . 15 532 MLO family AT5G53760 63.3 5.3e-190 661.4
Cpe02g01293 . 1 411 MLO family AT3G45290 50.6 2.3e-112 403.3
Cpe16g00545 . 1 276 MLO family AT3G45290 51.8 1.2e-81 301.2
Cpe13g00919 . 3 557 MLO family AT1G26700 68.0 7.5e-210 727.2
Cpe06g00699 . 6 532 MLO family AT1G26700 61.6 7.1e-184 641.0
Cpe09g00424 . 7 517 MLO family AT2G39200 64.0 2.2e-188 656.0
Cpe01g01228 . 20 511 MLO family AT2G39200 58.5 1.7e-159 560.1
Cpe05g00830 . 8 451 MLO family AT2G39200 59.3 9.1e-158 554.3
Cpe16g00545 . 1 325 MLO family AT2G39200 68.8 1.9e-131 466.8
Cpe09g00424 . 7 426 MLO family AT1G61560 61.9 1.7e-150 529.6
Cpe05g00830 . 8 411 MLO family AT1G61560 62.0 5.8e-138 488.0
Cpe01g01228 . 20 383 MLO family AT1G61560 60.7 1.1e-120 430.6
Cpe19g00902 CCT,ECH 28 424 MLO family AT1G61560 53.2 4.8e-116 415.2
Cpe10g00718 CCT,ECH 30 415 MLO family AT1G61560 50.7 1.1e-109 394.0
Cpe08g01280 CCT 30 396 MLO family AT1G61560 52.2 8.4e-105 377.9
Cpe16g00545 . 1 230 MLO family AT1G61560 73.0 1.1e-101 367.5
Cpe20g00765 . 16 288 MLO family AT1G61560 52.0 2.0e-74 276.9
Cpe19g00902 CCT,ECH 10 492 MLO family AT2G17430 61.6 6.3e-169 591.3
Cpe10g00718 CCT,ECH 12 483 MLO family AT2G17430 58.6 1.9e-157 553.1
Cpe08g01280 CCT 30 480 MLO family AT2G17430 61.1 3.5e-151 532.3
Cpe11g00780 . 2 366 MLO family AT2G17430 50.5 6.7e-102 368.6
Cpe16g00545 . 1 301 MLO family AT2G17430 51.8 6.3e-84 308.9
Cpe19g00902 CCT,ECH 7 569 MLO family AT2G17480 62.5 3.6e-194 675.2
Cpe10g00718 CCT,ECH 2 560 MLO family AT2G17480 60.0 2.2e-183 639.4
Cpe08g01280 CCT 5 563 MLO family AT2G17480 57.1 1.1e-169 594.0
Cpe11g00780 . 12 369 MLO family AT2G17480 52.3 2.3e-108 390.2
Cpe16g00545 . 1 277 MLO family AT2G17480 52.7 7.1e-81 298.9
Cpe19g00902 CCT,ECH 28 388 MLO family AT1G42560 59.9 6.9e-122 434.5
Cpe10g00718 CCT,ECH 30 391 MLO family AT1G42560 58.0 5.0e-120 428.3
Cpe08g01280 CCT 30 389 MLO family AT1G42560 56.5 2.1e-110 396.4
Cpe11g00780 . 12 335 MLO family AT1G42560 54.7 8.8e-101 364.4
Cpe16g00545 . 1 195 MLO family AT1G42560 52.8 6.6e-56 215.3
Cpe17g00281 . 6 421 MLO family AT4G24250 51.8 4.8e-105 378.6
Cpe10g00718 CCT,ECH 7 392 MLO family AT5G65970 64.2 6.9e-143 504.6
Cpe19g00902 CCT,ECH 8 389 MLO family AT5G65970 64.4 1.4e-140 496.9
Cpe08g01280 CCT 29 389 MLO family AT5G65970 66.8 1.3e-138 490.3
Cpe11g00780 . 9 335 MLO family AT5G65970 50.5 3.2e-92 336.3
Cpe16g00545 . 1 195 MLO family AT5G65970 57.9 1.0e-61 235.0
Cpe19g00902 CCT,ECH 28 472 MLO family AT2G33670 61.3 4.3e-156 548.5
Cpe10g00718 CCT,ECH 22 479 MLO family AT2G33670 56.4 3.1e-146 515.8
Cpe08g01280 CCT 30 458 MLO family AT2G33670 55.6 9.1e-130 461.1
Cpe16g00545 . 1 297 MLO family AT2G33670 52.5 2.3e-88 323.6
Cpe09g00424 . 64 542 MLO family AT1G11310 60.1 2.1e-166 582.8
Cpe01g01228 . 41 558 MLO family AT1G11310 52.6 3.0e-144 509.2
Cpe05g00830 . 63 466 MLO family AT1G11310 55.3 5.6e-135 478.4
Cpe16g00545 . 1 334 MLO family AT1G11310 65.5 2.4e-130 463.0
Cpe17g00281 . 1 504 MLO family AT2G44110 57.8 2.0e-153 539.7
Cpe12g00039 . 1 547 MLO family AT2G44110 52.8 5.6e-148 521.5
Cpe17g00281 . 1 512 MLO family AT4G02600 69.5 2.3e-200 695.7
Cpe12g00039 . 1 528 MLO family AT4G02600 67.0 1.6e-193 672.9
Cpe01g00481 . 4 502 MLO family AT1G11000 54.8 2.2e-156 549.7
Cpe14g01027 . 1 432 MLO family AT1G11000 51.2 2.9e-116 416.4
Cpe17g00281 . 1 512 MLO family AT4G02600 69.5 2.3e-200 695.7
Cpe12g00039 . 1 528 MLO family AT4G02600 67.0 1.6e-193 672.9
Cpe09g00424 . 64 542 MLO family AT1G11310 60.1 2.1e-166 582.8
Cpe01g01228 . 41 558 MLO family AT1G11310 52.6 3.0e-144 509.2
Cpe05g00830 . 63 466 MLO family AT1G11310 55.3 5.6e-135 478.4
Cpe16g00545 . 1 334 MLO family AT1G11310 65.5 2.4e-130 463.0
Cpe02g01293 . 1 411 MLO family AT3G45290 50.6 2.3e-112 403.3
Cpe16g00545 . 1 276 MLO family AT3G45290 51.8 1.2e-81 301.2
Cpe01g00481 . 4 502 MLO family AT1G11000 54.8 2.2e-156 549.7
Cpe14g01027 . 1 432 MLO family AT1G11000 51.2 2.9e-116 416.4
Cpe19g00902 CCT,ECH 28 472 MLO family AT2G33670 61.3 4.3e-156 548.5
Cpe10g00718 CCT,ECH 22 479 MLO family AT2G33670 56.4 3.1e-146 515.8
Cpe08g01280 CCT 30 458 MLO family AT2G33670 55.6 9.1e-130 461.1
Cpe16g00545 . 1 297 MLO family AT2G33670 52.5 2.3e-88 323.6
Cpe09g00424 . 7 426 MLO family AT1G61560 61.9 1.7e-150 529.6
Cpe05g00830 . 8 411 MLO family AT1G61560 62.0 5.8e-138 488.0
Cpe01g01228 . 20 383 MLO family AT1G61560 60.7 1.1e-120 430.6
Cpe19g00902 CCT,ECH 28 424 MLO family AT1G61560 53.2 4.8e-116 415.2
Cpe10g00718 CCT,ECH 30 415 MLO family AT1G61560 50.7 1.1e-109 394.0
Cpe08g01280 CCT 30 396 MLO family AT1G61560 52.2 8.4e-105 377.9
Cpe16g00545 . 1 230 MLO family AT1G61560 73.0 1.1e-101 367.5
Cpe20g00765 . 16 288 MLO family AT1G61560 52.0 2.0e-74 276.9
Cpe19g00902 CCT,ECH 10 492 MLO family AT2G17430 61.6 6.3e-169 591.3
Cpe10g00718 CCT,ECH 12 483 MLO family AT2G17430 58.6 1.9e-157 553.1
Cpe08g01280 CCT 30 480 MLO family AT2G17430 61.1 3.5e-151 532.3
Cpe11g00780 . 2 366 MLO family AT2G17430 50.5 6.7e-102 368.6
Cpe16g00545 . 1 301 MLO family AT2G17430 51.8 6.3e-84 308.9
Cpe19g00902 CCT,ECH 7 569 MLO family AT2G17480 62.5 3.6e-194 675.2
Cpe10g00718 CCT,ECH 2 560 MLO family AT2G17480 60.0 2.2e-183 639.4
Cpe08g01280 CCT 5 563 MLO family AT2G17480 57.1 1.1e-169 594.0
Cpe11g00780 . 12 369 MLO family AT2G17480 52.3 2.3e-108 390.2
Cpe16g00545 . 1 277 MLO family AT2G17480 52.7 7.1e-81 298.9
Cpe19g00902 CCT,ECH 28 388 MLO family AT1G42560 59.9 6.9e-122 434.5
Cpe10g00718 CCT,ECH 30 391 MLO family AT1G42560 58.0 5.0e-120 428.3
Cpe08g01280 CCT 30 389 MLO family AT1G42560 56.5 2.1e-110 396.4
Cpe11g00780 . 12 335 MLO family AT1G42560 54.7 8.8e-101 364.4
Cpe16g00545 . 1 195 MLO family AT1G42560 52.8 6.6e-56 215.3
Cpe10g00718 CCT,ECH 7 392 MLO family AT5G65970 64.2 6.9e-143 504.6
Cpe19g00902 CCT,ECH 8 389 MLO family AT5G65970 64.4 1.4e-140 496.9
Cpe08g01280 CCT 29 389 MLO family AT5G65970 66.8 1.3e-138 490.3
Cpe11g00780 . 9 335 MLO family AT5G65970 50.5 3.2e-92 336.3
Cpe16g00545 . 1 195 MLO family AT5G65970 57.9 1.0e-61 235.0
Cpe13g00919 . 2 557 MLO family AT5G53760 69.2 1.6e-215 746.1
Cpe06g00699 . 15 532 MLO family AT5G53760 63.3 5.3e-190 661.4
Cpe09g00424 . 7 517 MLO family AT2G39200 64.0 2.2e-188 656.0
Cpe01g01228 . 20 511 MLO family AT2G39200 58.5 1.7e-159 560.1
Cpe05g00830 . 8 451 MLO family AT2G39200 59.3 9.1e-158 554.3
Cpe16g00545 . 1 325 MLO family AT2G39200 68.8 1.9e-131 466.8
Cpe17g00281 . 6 421 MLO family AT4G24250 51.8 4.8e-105 378.6
Cpe13g00919 . 3 557 MLO family AT1G26700 68.0 7.5e-210 727.2
Cpe06g00699 . 6 532 MLO family AT1G26700 61.6 7.1e-184 641.0
Cpe17g00281 . 1 504 MLO family AT2G44110 57.8 2.0e-153 539.7
Cpe12g00039 . 1 547 MLO family AT2G44110 52.8 5.6e-148 521.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000765 3 4 3 4 2 3 4 3 3 3 2 3 4 3 3 4 2 3 4 3 3 3 3 3 3 3 2 6 2 2 93
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00902 Cpe_Chr19 FPKM 9.282313 10.913781 6.341204 6.869772 8.900226 7.178928 9.543176 6.94835 8.516561 10.274083