Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00909 ATGTTTCCAAGACTTGTGAATCCTGACGGAGATATCCAGATCCATGGCAGCCGTGGTTCTGTTGCTTCCGACCTCACTCATCCCCACAGGGGCGATCCTTGTCTCGTTTTGACTTCAGATCCCAAACCTCGACTCCGATGGACTGCCGATCTTCACGAGCGATTCGTCGATGCTGTCACTCAACTCGGTGGTGCTAACAAAGCTACACCAAAAGCAATAATGCGAACAATGAATGTGAAAGGACTGACTCTCTTCCATTTGAAGAGCCACCTCCAGAAATACAGATTAGGTAAGCAATCAGGGAAGGATATGGGTGAGGCCTCTAAAGATGGTGCATATCTTTTAGAAAGTCCAAGTATCAGTAATTTCTCTCCTGACTTGCCAATTTCTGAAATGACCGATGGTTATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAGTTACATCTGCAAGTCGAGGCAGAGAAGCATCTACGAATTCGTCAGGATGCCGAGCGAAGATATTTGGCGATGCTTGAGAGAGCTTGTAAAATGCTTGCAGATCAATTCATTGGAGGTGCGGTTTCGGACTCGGACAGCAAGAAGTCTCAAGGACTAGATCATAAGAGCCCGAGAAGTTCCTCGATTGACCCACTTGGTTTCTATGCTTCGCAGTCACAGGGGATGGAAAGAGCGAATGGCACAGAAGAATTGCAAGCTAATCCTCCTTACCAAAGGGCTGATTGTTCGACCGAAAGCTGCCTAACCTCGAACGAAAGTCCTGGGGGATTGACTATGGAGAAATCTCCCGTGGCAAGCAAGAAAAACATAGTTAACTTGGATTCAGCAAATGCATCTTTGATTTGGGATGAAGCTAGGGAAGGAATACAAGATGCTAATATCATCCAAATTAATCATCACGGCGTATCTGAGTGCGACATGTGGGGATGA 942 46.07 MFPRLVNPDGDIQIHGSRGSVASDLTHPHRGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGANKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDMGEASKDGAYLLESPSISNFSPDLPISEMTDGYEVKEALRAQMEVQSKLHLQVEAEKHLRIRQDAERRYLAMLERACKMLADQFIGGAVSDSDSKKSQGLDHKSPRSSSIDPLGFYASQSQGMERANGTEELQANPPYQRADCSTESCLTSNESPGGLTMEKSPVASKKNIVNLDSANASLIWDEAREGIQDANIIQINHHGVSECDMWG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6603590 6607193 - Cp4.1LG19g08330.1 Cpe19g00909 486317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00909 313 MobiDBLite consensus disorder prediction 191 217 - -
Cpe19g00909 313 MobiDBLite consensus disorder prediction 238 261 - -
Cpe19g00909 313 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 15 307 - -
Cpe19g00909 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Cpe19g00909 313 MobiDBLite consensus disorder prediction 1 26 - -
Cpe19g00909 313 Pfam MYB-CC type transfactor, LHEQLE motif 137 182 IPR025756 -
Cpe19g00909 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 307 IPR044848 GO:0003700
Cpe19g00909 313 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Cpe19g00909 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677
Cpe19g00909 313 Pfam Myb-like DNA-binding domain 45 95 IPR001005 -
Cpe19g00909 313 MobiDBLite consensus disorder prediction 238 265 - -
Cpe19g00909 313 Gene3D - 41 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00909 - - - csv:105435941 563.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00910 Cpe-Chr15:8713480 Cpe19g00909 Cpe-Chr19:6603590 2.23E-48 dispersed
Cpe19g00909 Cpe-Chr19:6603590 Cpe08g01373 Cpe-Chr8:9861359 1.40E-33 dispersed
Cpe10g00725 Cpe-Chr10:4143111 Cpe19g00909 Cpe-Chr19:6603590 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe15g00191 . 154 356 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Cpe05g00160 . 168 353 G2-like Transcription Factor Family AT5G16560 53.8 2.9e-41 166.8
Cpe07g00452 CCT,CST 13 152 G2-like Transcription Factor Family AT5G42630 58.3 3.1e-37 152.5
Cpe13g00409 CCT 20 255 G2-like Transcription Factor Family AT1G25550 50.6 3.6e-51 199.1
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT1G25550 52.2 2.5e-44 176.4
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT3G25790 51.8 1.0e-36 151.0
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT5G05090 54.4 2.2e-74 276.2
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 2.3e-71 266.2
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 9.6e-70 260.8
Cpe03g00415 . 1 265 G2-like Transcription Factor Family AT5G05090 57.9 4.5e-67 251.9
Cpe03g01593 CST 12 313 G2-like Transcription Factor Family AT4G13640 56.5 9.0e-61 231.1
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe11g00707 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 4.7e-37 152.5
Cpe05g01028 CST 1 160 G2-like Transcription Factor Family AT1G79430 75.3 3.9e-58 222.6
Cpe08g00397 CST 26 196 G2-like Transcription Factor Family AT1G79430 56.5 1.5e-38 157.5
Cpe03g01593 CST 41 205 G2-like Transcription Factor Family AT1G79430 59.4 6.5e-37 152.1
Cpe10g00724 . 84 317 G2-like Transcription Factor Family AT2G01060 51.6 6.2e-52 201.4
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT3G10760 60.7 4.4e-88 322.0
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 4.4e-88 322.0
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT3G10760 59.5 6.0e-85 311.6
Cpe03g00415 . 1 278 G2-like Transcription Factor Family AT3G10760 56.7 8.6e-76 281.2
Cpe08g01347 . 1 287 G2-like Transcription Factor Family AT2G40970 50.5 3.4e-61 232.3
Cpe19g00248 . 1 204 G2-like Transcription Factor Family AT2G40970 61.6 5.5e-59 224.9
Cpe03g00415 . 1 195 G2-like Transcription Factor Family AT2G40970 59.4 9.3e-59 224.2
Cpe10g01100 . 1 203 G2-like Transcription Factor Family AT2G40970 58.8 1.2e-58 223.8
Cpe05g00834 . 108 367 G2-like Transcription Factor Family AT4G28610 50.2 6.2e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007112 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51041 PF00249 Myb_DNA-binding 4.10E-06 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g00909 Cpe_Chr19 FPKM 16.600225 13.712474 16.684216 16.465939 13.491305 14.563598 14.506488 13.07905 14.715927 15.284894