Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00939 ATGGCGACCTCATGTTTTGGTTCACTTTGCATTCGTAAATCAAAGAGCAAGCCATTATCAACCCTTTTCTCCTTGAAATCCCAGATGAATTCTGAAATGGAAAATATGGAAAGGAGAAGGTTTGATAGTTTGGAATCGTGGTCGATGATCCTAGAGTCTGAAAATATGGAAACTTGGGAGACATCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTCTCTCAGCTCTTCATTGGCAACAAATTTGCCTCCGGTGCGCACAGTCGGATATACCGTGGAATTTATAAGCAGAGAGCCGTTGCTGTGAAGATGGTCAGAATTCCAAACCAAAAGGAGGAAACAAGAGTCAAACTTGAGCAGCAATTCAAGTCTGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCCAGCATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCACCGGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGAATGTATCTTAACAAGAAAGAGCCATATTCACTGTCAATAGAAACAATACTGAGGCTAGCTCTAGACATATCAAGAGGAATGGAATACCTTCATTCCCAAGGGGTAATCCACAGAGACCTCAAGTCAAATAACTTGCTTCTAAACGATGAAATGAGAGTAAAAGTAGCGGATTTTGGAACCTCCTGCCTCGAAACACAGTGTCGAGAAACAAAAGGGAACATGGGAACTTACAGATGGATGGCGCCGGAGATGATTAAAGAGAAGCCTTACACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTGCTGTGGGAGCTCACCACGGTTCTGCTTCCGTTTCAAGGGATGACTCCGGTGCAGGCTGCCTTTGCCGTCGCCGAGAAGAATGAGAGACCGCCATTGCCGGCGAGTTGTCAACCGGCGTTAGCACACCTGATAAAGCGGTGTTGGGCGGCGAATCCATCGAAGCGGCCGGATTTCAGCGACATTGTGGCGGCTTTGGAGAAATACGACGAGTGCGTGAAAGAGGGTCTTCCACTTGCACACCATAAAGGATTGGTAAACCGAAACGCCATTATTGAACGCTTGACAGCTTGCGCCTCAACCAGTTCTTCAATACCTGTACATGCCTGA 1122 45.99 MATSCFGSLCIRKSKSKPLSTLFSLKSQMNSEMENMERRRFDSLESWSMILESENMETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRVKLEQQFKSEVALLSRLFHPSIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSIETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTVLLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVAALEKYDECVKEGLPLAHHKGLVNRNAIIERLTACASTSSSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6724858 6727831 - Cp4.1LG19g08050.1 Cpe19g00939 486347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00939 373 CDD STKc_MAP3K-like 83 330 - -
Cpe19g00939 373 Pfam Protein tyrosine and serine/threonine kinase 78 330 IPR001245 GO:0004672|GO:0006468
Cpe19g00939 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Cpe19g00939 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Cpe19g00939 373 Gene3D Transferase(Phosphotransferase) domain 1 159 354 - -
Cpe19g00939 373 SUPERFAMILY Protein kinase-like (PK-like) 50 330 IPR011009 -
Cpe19g00939 373 SMART serkin_6 76 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00939 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672|GO:0006468
Cpe19g00939 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672|GO:0006468
Cpe19g00939 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672|GO:0006468
Cpe19g00939 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Cpe19g00939 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672|GO:0006468
Cpe19g00939 373 ProSiteProfiles Protein kinase domain profile. 76 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00939 373 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 9 361 - -
Cpe19g00939 373 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00193 Cpe-Chr10:1119287 Cpe19g00939 Cpe-Chr19:6724858 5.47E-113 dispersed
Cpe11g00660 Cpe-Chr11:4407567 Cpe19g00939 Cpe-Chr19:6724858 7.19E-100 dispersed
Cpe19g00939 Cpe-Chr19:6724858 Cpe20g00236 Cpe-Chr20:1347646 1.46E-139 dispersed
Cpe10g00762 Cpe-Chr10:4328877 Cpe19g00939 Cpe-Chr19:6724858 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63054 PF07714 PK_Tyr_Ser-Thr 1.00E-66 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00939 - - cmo:103484647 721.465