Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00947 ATGGATGGTCCCGGCGGAAGTTCTTCAGGTATGATGAATTTTGGAGATCAAAATAATAGTAATAATGGGTTATGTTCTTCCATGATGATGATGATGCCTTTAATGTCTTCTCACCACCACCACCATCAAGGAGATGCATGTAATCCATTTCCTCCTCTTCCTTCTCCTAATTACACTACCAACAACATCAACAACACCAACACTTCTTCTTCTTCTAACCCTATTTGTTACTTCATGGATGAACACACCACCACCACCACCACCACCAACAACAACGATCATGGGTGTTGTAATGCAAATTCGTCTTCTTGTGAATTGAAGGCCAAAATTATGGGTCATCCTCACTACCACCGCCTTCTTGCTGCCTATGTCAATTGTCGAAAGGTGGGGGCGCCGCCGGATGTGGTGGCGAGGCTTGAAGGAGCGTGTGCATCTGCACTCACAATGAGTGGTACGTCTTGTACGGGGTGTATTGGTGAAGATCCGGCTCTTGACCAGTTCATGGAAGCTTACTGCGAGATGCTCACTAAATATGAACAAGAACTTTCCAAACCCTTTAGGGATGCCATGCTTTTTCTTCACCGAATCGAGTGCCAATTCAAAGCCCTCTCTATTTCATCCTCCGACGCTGTTTGTGGTGAGGCATTTGAAAGGAATGGTTCGTCTGAAGAGGAAGTTGATATCAATGGGCACTCTATCGACCCTCAAGCCGAAGACCGCGAACTGAAAGGTCAGCTCCTCCGCAAGTACAGTGGATGCTTGGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTGCCTAAGGAGGCCAGACAACAGCTCCTTGACTGGTGGAGTAGACATTACAAGTGGCCTTATCCATCTGAATCACAGAAGCTAGCCTTGGCTCAATCAACAGGGTTGGATCAAAAGCAAATCAACAACTGGTTCATCAACCAAAGGAAAAGGCACTGGAAACCCTCTGAAGATATGCAGTTCGTGGTGATGGATGGTGGGCATCCGCAGTATTACATGGACACCGTGTTGGGCAATCCTTTTCCCTTGGATATCTCTCCCACTCTGCTCTAA 1080 46.57 MDGPGGSSSGMMNFGDQNNSNNGLCSSMMMMMPLMSSHHHHHQGDACNPFPPLPSPNYTTNNINNTNTSSSSNPICYFMDEHTTTTTTTNNNDHGCCNANSSSCELKAKIMGHPHYHRLLAAYVNCRKVGAPPDVVARLEGACASALTMSGTSCTGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLHRIECQFKALSISSSDAVCGEAFERNGSSEEEVDINGHSIDPQAEDRELKGQLLRKYSGCLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDGGHPQYYMDTVLGNPFPLDISPTLL 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6757566 6760505 + Cp4.1LG19g07900.1 Cpe19g00947 486355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00947 359 SMART ELK_2 241 262 IPR005539 GO:0003677
Cpe19g00947 359 Pfam Homeobox KN domain 281 320 IPR008422 GO:0003677|GO:0006355
Cpe19g00947 359 SMART KNOX2_2 154 205 IPR005541 GO:0003677|GO:0005634
Cpe19g00947 359 Pfam KNOX2 domain 157 203 IPR005541 GO:0003677|GO:0005634
Cpe19g00947 359 SMART HOX_1 263 328 IPR001356 GO:0003677
Cpe19g00947 359 Pfam KNOX1 domain 106 144 IPR005540 GO:0003677|GO:0005634
Cpe19g00947 359 Pfam ELK domain 241 262 IPR005539 GO:0003677
Cpe19g00947 359 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 348 - -
Cpe19g00947 359 SUPERFAMILY Homeodomain-like 263 338 IPR009057 -
Cpe19g00947 359 ProSiteProfiles 'Homeobox' domain profile. 261 324 IPR001356 GO:0003677
Cpe19g00947 359 SMART KNOX1_2 104 148 IPR005540 GO:0003677|GO:0005634
Cpe19g00947 359 PANTHER - 5 348 - -
Cpe19g00947 359 CDD homeodomain 273 325 IPR001356 GO:0003677
Cpe19g00947 359 ProSiteProfiles ELK domain profile. 241 261 IPR005539 GO:0003677
Cpe19g00947 359 Gene3D - 266 328 - -
Cpe19g00947 359 ProSitePatterns 'Homeobox' domain signature. 299 322 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00244 Cpe-Chr2:1263078 Cpe19g00947 Cpe-Chr19:6757566 5.06E-86 dispersed
Cpe04g00712 Cpe-Chr4:7053610 Cpe19g00947 Cpe-Chr19:6757566 2.18E-75 dispersed
Cpe11g00100 Cpe-Chr11:547226 Cpe19g00947 Cpe-Chr19:6757566 3.37E-76 dispersed
Cpe11g00875 Cpe-Chr11:7100812 Cpe19g00947 Cpe-Chr19:6757566 4.67E-69 dispersed
Cpe19g00947 Cpe-Chr19:6757566 Cpe09g00513 Cpe-Chr9:3419266 3.42E-72 dispersed
Cpe19g00947 Cpe-Chr19:6757566 Cpe06g00228 Cpe-Chr6:1210210 1.14E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51044 PF03791 KNOX2 4.30E-20 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00947 - - cmax:111497440 644.425