Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00951 ATGGACAAAGGATGGGGTCTTACCCTTCGTGATTCCGACCACTCTATTGGGTTCTTCTCAAACAAGCCACCCCCATCCACTGTCAATTCTTTTCACAGCGTTATGTTCCAAGGTATTGATTTTCCCGGGAAACTTGGCCGGACTGACGACGACAAGCCTGCTCTGCCGCTTCCCGATCACACCCGGTTAGCCGTCAACGAGGTCGACTTTTTTTCCGATAAGAAAAGGGTGGTTGATGATAGGGAGGATGAAGACTCCAAACCTCCGGTTCATATCATCGCCTCCGCTGTCAATAAAGACCACAACAATTTCACTGCTCCCACAACTGCCTTCAATCGTGTTAATACTGGTTTGCATCTGTTAACTGCGAACACCGGAAGCGATCAATCGACGGTGGATGATGGGATTTCATCGGATGGAGAAGATAAACGAGCCAAGAACGAGCTAGCGCAGCTTCAAGTGGAGCTTCAGCGTATGAACGCTGAGAATCACAAGCTGAGGGACATGCTAAGCCATGTGAGAAACAACTACACTACCTTACAAATGCATATCTCCACCTTTATGCAACAGCAACAGCAACAGCAACAGCAACAAAATCAGGCCTTGGAATCCGCTCATGAACGACAGCCCACGGAAAAGCACGATCAAGTTGGGAAGGTGGTAATTCCGAGGCAATTTATGGATCTGGGACCCAGTGGGAAGACAGGGGAAGGCGATCATGAATTATTCCATTCATCATCGGATGAAAGAACTGGTTCTGGGTCTCCGTTGAACAACACAGAAACCGCCTCCAAAAAGAGCACCGGAAGAGACCAGGAAATGGGTCCTTCCGATCAGGAGAATTCCAATTTACGATCAGATGGAAAAAGATCCATGGGCAGAGAAGAAAGCCCAGAGTCAGAATCTCACGGGTGGGGTGGTCCTAATAAAGCCCCCAGATTGAACTCTGCTTCTAAACCACTTGATCAACAATCCACCGAAGCCACCATGAGAAAAGCCCGTGTCTCAGTCCGTGCTCGATCAGAAGCTCCCATGATTTCTGATGGGTGTCAATGGCGAAAATATGGCCAAAAAATGGCTAAAGGAAACCCCTGTCCACGGGCGTATTATCGGTGCACAATGGCAGTGGGTTGCCCTGTTCGGAAACAAGTTCAACGTTGTGCTGAAGACACGACTATATTGATAACAACCTATGAGGGTAACCACAATCACCCACTTCCGCCGGCTGCGATGGCCATGGCATCCACCACGACGGCGGCGGCTAGCATGTTGTTGTCAGGGTCCATGTCAAGTGCGGACCATAATCTAATGAACCCAAATTTATTGGCTCGAGCCATACTCCCATGTTCCTCAAGCATGGCTACAATTTCAGCTTCGGCTCCATTTCCAACCATCACATTAGACCTCACTCACACCCCGAACCCATTGCAGTTCCAAAGACCAGCACCCACGCCGTTCCACGTGCCGTTCGAAGCCGGACAACCACCGTCTGCCGCCGCCCAATTGCCGCAGGTTTTGGGGCAAGCGCTATACAATCAATCAAAATTCTCGGGGCTACAGCTCTCTCATGATATGGGAGCCAATTCCTCCCATCTGGGTCACCACCAAATTTCACAACCGACCGTGGCATCATCCCAGCCTAGTGGTGCTTCTTTTGCCGACACGTTAAGTGCCGCCACCGCCGCTATCACCGCGGATCCGAACTTCACAGCCGCTCTAGCCGCCGCTATCTCCTCCATCATCGGCGGAGCTCATTCAAATAATAACAACACCACCCCCACCAATACTACGTCTACATCAAACAACAACGGAAGCAGCAACAACAACACCAACAACACCAAAATTAGCAGTTTCCCAGGAAAGTAG 1866 50.16 MDKGWGLTLRDSDHSIGFFSNKPPPSTVNSFHSVMFQGIDFPGKLGRTDDDKPALPLPDHTRLAVNEVDFFSDKKRVVDDREDEDSKPPVHIIASAVNKDHNNFTAPTTAFNRVNTGLHLLTANTGSDQSTVDDGISSDGEDKRAKNELAQLQVELQRMNAENHKLRDMLSHVRNNYTTLQMHISTFMQQQQQQQQQQNQALESAHERQPTEKHDQVGKVVIPRQFMDLGPSGKTGEGDHELFHSSSDERTGSGSPLNNTETASKKSTGRDQEMGPSDQENSNLRSDGKRSMGREESPESESHGWGGPNKAPRLNSASKPLDQQSTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADHNLMNPNLLARAILPCSSSMATISASAPFPTITLDLTHTPNPLQFQRPAPTPFHVPFEAGQPPSAAAQLPQVLGQALYNQSKFSGLQLSHDMGANSSHLGHHQISQPTVASSQPSGASFADTLSAATAAITADPNFTAALAAAISSIIGGAHSNNNNTTPTNTTSTSNNNGSSNNNTNNTKISSFPGK 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6777505 6780568 + Cp4.1LG19g07870.1 Cpe19g00951 486359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00951 621 SUPERFAMILY WRKY DNA-binding domain 339 407 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe19g00951 621 MobiDBLite consensus disorder prediction 125 144 - -
Cpe19g00951 621 SMART WRKY_cls 346 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe19g00951 621 PANTHER WRKY TRANSCRIPTION FACTOR 6 58 590 - -
Cpe19g00951 621 MobiDBLite consensus disorder prediction 248 265 - -
Cpe19g00951 621 Gene3D WRKY domain 331 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe19g00951 621 MobiDBLite consensus disorder prediction 316 331 - -
Cpe19g00951 621 MobiDBLite consensus disorder prediction 188 205 - -
Cpe19g00951 621 Coils Coil 142 176 - -
Cpe19g00951 621 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 58 590 IPR044810 GO:0003700
Cpe19g00951 621 MobiDBLite consensus disorder prediction 188 340 - -
Cpe19g00951 621 Coils Coil 188 208 - -
Cpe19g00951 621 MobiDBLite consensus disorder prediction 527 550 - -
Cpe19g00951 621 Pfam WRKY DNA -binding domain 348 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe19g00951 621 MobiDBLite consensus disorder prediction 584 621 - -
Cpe19g00951 621 MobiDBLite consensus disorder prediction 283 301 - -
Cpe19g00951 621 ProSiteProfiles WRKY domain profile. 341 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00776 Cpe19g00951 CCT
Cpe10g00776 Cpe19g00951 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00720 Cpe-Chr4:7091741 Cpe19g00951 Cpe-Chr19:6777505 5.79E-124 dispersed
Cpe19g00951 Cpe-Chr19:6777505 Cpe20g00199 Cpe-Chr20:1150014 7.71E-35 dispersed
Cpe10g00776 Cpe-Chr10:4413950 Cpe19g00951 Cpe-Chr19:6777505 0 wgd
Cpe15g00738 Cpe-Chr15:7706728 Cpe19g00951 Cpe-Chr19:6777505 8.43E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51045 PF03106 WRKY 4.60E-24 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00951 - - mcha:111012275 845.114