Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00972 ATGTTCGATCCGGATATGTTTGATACGCATCATCATATGCTTGATATGGCCTTTAACACTTCAGAAAACGAGTTGGAGAATGTTAGAGACGATGATTTTGAGGCCAAATCGGGAGCTGAAATGTTAGGGGAAGCTTGTGGGAGTGACCAACAACGCTCCAAGAAGAAACGCTATAATCGCCATACGCAGCACCAAATCCAAGAAATGGAAGCGTGCATCGACCGAATGAATGGATATGCCCCAAAATGTGCAAAGCCACTGCCTTCTTCCTATTACCACCTACCCTCCAACGCCCCCACGCGATCTCTCGACTTGGGCATCACAAATTTCGGTCAACAGTCGTGTTTCGTCGGAGAAATGTATGGAACCGCCGACTTTCTCCGCTCCATTTCCAGACCTTCTGAAGCCGACAAGCCGGTCATTGTGGAGTTGGCCGTTTCGGCTATGGATGAACTGACCCGGATGGCTCAGGCTGGGGAACCGTTGTGGGTTCCGGGTGATAGTAAGTCCAGTGAAGTGGTGCTTAATGAATCTGAGTATTTGACCAGTTTCCGAGGCGGAATTGGGCCGAAATCGTTGGGCTTGAGAACTCAAGCTTCGCGTGTTTCGGCTATTGTGTTCATGAACCACGTTAAGCTTGTGGATATTTTTATGGATGCCATGAGCGCTGAATTCCAAGTCCCATCGCCGCTGGTTCCGACTCGCGAAAACTACTTCGTAAGATACTGCAAACAGCACAGCGATGGCACATGGGCTGTGGCTGATGTTTCCTTGGACACTTTGAGCCCTTCTCCCATCCCAAAGAGCCGACGGAGACCCTCGGGTTGTCTAATTCAAGAATTGCCCAACGGCTACTCTAAGATCACTTGGGTGGAACATGTAGAGGTCGACGAAACTGGCGTCCCTTCAATGTATAGACCGCTCGTTAATTCAGGCCTTGCTTTCGGCGCAAAACGATGGGTCGCTACTCTTGATAGGCAGTGTGAACGTCTAGCCACTTCCATGGCAACCACCATAGCGACCGGCGAATTACGCGTGATGTCGAGTATTGAGGGAAGGAAGAGTATGCTGAAGCTGGCTGAAAGAATGGTGACGAGCTTTTGCGCTGGCGTCGGCGCGTCCAGTATACACGCTTGGACAGCTTTGCCGGCCGCCGGCAGTGATGATGTTCGTGTTGTGACGAGGAAAAGCACCGATGAACCAGGGCGTCCACCTGGTGTTGTGCTTAGCGCGGCTACCTCTTTTTGGATCCCTGTTTCTCCTAAGGTTGTGTTTGATTTCCTTCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAACAGGGGCTTGGTTCAGGAAATGGCAAACATAGCCAACGGCCGCCACTCTGGAAATTGTGTCTCGTTGCTCCGTGTCAATAGTGCAAATTCGAGCCAGAGCAATATGCTGATACTACAAGAGAGCTGCACCGATTCCACAGGATCATACGTTGTTTATGCTCCGGTGGACACTGTTGCAATGAACGTGGTGCTAAGCGGTTGCGACCCGGATTACGTGGCACTTCTACCGTCGGGATTCGCCATACTTCCCGACGGACCCGCCGGCAGCAACGGCGGAGGAATTCTGGAGGTGGGGTCCGGTGGGTCACTAATCACTGTTGCATTTCAAATCCTGGTTGATTCAGTTCCAACGGCGAGACTTTCAATTGGATCGGTTGCCACCGTTAACAGTCTGATTAAGTGCACGGTTGAGAGGATCAGAGCCGCTGTGATGCGTGAAACCCATGATTAA 1776 51.07 MFDPDMFDTHHHMLDMAFNTSENELENVRDDDFEAKSGAEMLGEACGSDQQRSKKKRYNRHTQHQIQEMEACIDRMNGYAPKCAKPLPSSYYHLPSNAPTRSLDLGITNFGQQSCFVGEMYGTADFLRSISRPSEADKPVIVELAVSAMDELTRMAQAGEPLWVPGDSKSSEVVLNESEYLTSFRGGIGPKSLGLRTQASRVSAIVFMNHVKLVDIFMDAMSAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVADVSLDTLSPSPIPKSRRRPSGCLIQELPNGYSKITWVEHVEVDETGVPSMYRPLVNSGLAFGAKRWVATLDRQCERLATSMATTIATGELRVMSSIEGRKSMLKLAERMVTSFCAGVGASSIHAWTALPAAGSDDVRVVTRKSTDEPGRPPGVVLSAATSFWIPVSPKVVFDFLRKEKSRSEWDILSNRGLVQEMANIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPAGSNGGGILEVGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRETHD 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6850520 6855909 - Cp4.1LG19g07840.1 Cpe19g00972 486380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00972 591 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN-RELATED 16 71 - -
Cpe19g00972 591 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN-RELATED 73 219 - -
Cpe19g00972 591 Gene3D - 205 335 IPR023393 -
Cpe19g00972 591 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 71 IPR042160 -
Cpe19g00972 591 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 219 587 IPR042160 -
Cpe19g00972 591 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN-RELATED 219 587 - -
Cpe19g00972 591 SUPERFAMILY Bet v1-like 136 331 - -
Cpe19g00972 591 SUPERFAMILY Bet v1-like 352 582 - -
Cpe19g00972 591 CDD START_ArGLABRA2_like 138 329 - -
Cpe19g00972 591 ProSiteProfiles START domain profile. 134 333 IPR002913 GO:0008289
Cpe19g00972 591 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 73 219 IPR042160 -
Cpe19g00972 591 SMART START_1 143 330 IPR002913 GO:0008289
Cpe19g00972 591 MobiDBLite consensus disorder prediction 43 62 - -
Cpe19g00972 591 Pfam START domain 221 330 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00792 Cpe19g00972 CCT
Cpe19g00972 Cpe20g00379 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00733 Cpe-Chr4:7208678 Cpe19g00972 Cpe-Chr19:6850520 0 dispersed
Cpe10g00792 Cpe-Chr10:4503487 Cpe19g00972 Cpe-Chr19:6850520 7.10E-93 wgd
Cpe15g00750 Cpe-Chr15:7784636 Cpe19g00972 Cpe-Chr19:6850520 0 wgd
Cpe16g00448 Cpe-Chr16:5744649 Cpe19g00972 Cpe-Chr19:6850520 6.20E-149 wgd
Cpe19g00972 Cpe-Chr19:6850520 Cpe20g00379 Cpe-Chr20:2136801 0 wgd
Cpe19g00972 Cpe-Chr19:6850520 Cpe05g01445 Cpe-Chr5:10078047 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00972 K09338 - csv:101209093 861.292