Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00980 ATGGCAGAGGATTTTCAGGCTGCTATTTGCGGCGATAATTGGTGGAGCTCTTCACGAAACATGATGGTCACCGTCGGTGGCTTATCGCCCTGTTCCGTCGGGATCGGCGACCTAGGTTGGCCGCCGGCTGATGATTTCCTCGACATCAAGCCCAAGTCCGCAACTGATTCCGACCACAACAACAGCAACAACAATAACTCCATGCTTTTTCAAGACTATTCCACCTTCCAAATGATGGGTTTTGCTCTCTCTTCTTCCACCACCTCCGATCATTGGAACCAACCTGATGGTTTACTTTGCGGCGATGGGCGAGGTGAGAGCAACTTCAATTCGAATGGAATTGAGAGGTACAAAGATGAGGAAATTAAAACGAGTTTCTCGTCTGATTCGAGCTTCATAAACGGATTGAAGCAAGGAGATGATGAAGATTACAACATGTTGGAGCAAAATGGTTTGATGTCTATTAACTGTTCATCCACAACTAACACACCCACTTGCCAGGGTTTGTTTCCTCTTGACTCAACTTTATATGGATACCCTCATCAACAACAACAACAACAACAACCACCACATGCCCATTCCCTTTTCAACGCAACCCACCCTCACCCTCAGCCTGTTTCTGCCGCCTTGCACTTCGCCAATAACACTCCCTTTTGGAACGCCCCATCCGCAGCTACTTCAACTCACATTCCACAGGGCATTGCTTCCTTACTTGAACAAAAGAGCGCCAAGCCTATCAATAATGGTAATTGTGAAAATGGTCAAGAACCCAAGAAATGTGACAAAAACAGCGCAAATGAATCAGTACCAGTGTTCAAAAGGCCTCGAATTGAAACTCCATCACCATTGCCGACATTTAAGGTGCGGAAAGAGAAGCTAGGGGACCGTGTGACTGCGCTTCAACAACTGGTTTCACCGTTTGGAAAGACCGATACTGCCTCAGTTCTTCACGAAGCCATTGAGTACATCAAGTTCCTCCACGATCAAGTCAGTGTCTTAAGCACTCCATATATGAAGAGCAACAATGGAATAACACCCACCCTACAACACCAACAGGTATGTGAAAAGGAAGACCCAGATTGCCCAAAACAAGATCTGAGAAGCCGAGGGCTTTGCTTGGTGCCGGTCTCAAGCACATTTCCAGTGTCCAATGTAGGCACGGCGGACTTCTGGACTCCGACGTTCGGTGGAACATTCCGGTGA 1203 47.3 MAEDFQAAICGDNWWSSSRNMMVTVGGLSPCSVGIGDLGWPPADDFLDIKPKSATDSDHNNSNNNNSMLFQDYSTFQMMGFALSSSTTSDHWNQPDGLLCGDGRGESNFNSNGIERYKDEEIKTSFSSDSSFINGLKQGDDEDYNMLEQNGLMSINCSSTTNTPTCQGLFPLDSTLYGYPHQQQQQQQPPHAHSLFNATHPHPQPVSAALHFANNTPFWNAPSAATSTHIPQGIASLLEQKSAKPINNGNCENGQEPKKCDKNSANESVPVFKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKSNNGITPTLQHQQVCEKEDPDCPKQDLRSRGLCLVPVSSTFPVSNVGTADFWTPTFGGTFR 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6899236 6901398 + Cp4.1LG19g07670.1 Cpe19g00980 486388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00980 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 341 IPR036638 GO:0046983
Cpe19g00980 400 PANTHER TRANSCRIPTION FACTOR BHLH112 46 387 - -
Cpe19g00980 400 MobiDBLite consensus disorder prediction 246 265 - -
Cpe19g00980 400 Gene3D - 287 350 IPR036638 GO:0046983
Cpe19g00980 400 CDD bHLH_AtbHLH_like 283 334 IPR045239 -
Cpe19g00980 400 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 387 - -
Cpe19g00980 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 277 326 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01685 Cpe-Chr2:13903002 Cpe19g00980 Cpe-Chr19:6899236 6.07E-31 dispersed
Cpe04g01116 Cpe-Chr4:9662278 Cpe19g00980 Cpe-Chr19:6899236 3.26E-40 dispersed
Cpe10g00636 Cpe-Chr10:3663318 Cpe19g00980 Cpe-Chr19:6899236 1.16E-33 dispersed
Cpe19g00825 Cpe-Chr19:6162754 Cpe19g00980 Cpe-Chr19:6899236 6.92E-30 dispersed
Cpe01g00844 Cpe-Chr1:5005140 Cpe19g00980 Cpe-Chr19:6899236 1.24E-63 transposed
Cpe15g00457 Cpe-Chr15:5643517 Cpe19g00980 Cpe-Chr19:6899236 2.00E-30 transposed
Cpe10g00807 Cpe-Chr10:4577249 Cpe19g00980 Cpe-Chr19:6899236 2.47E-80 wgd
Cpe19g00980 Cpe-Chr19:6899236 Cpe20g00397 Cpe-Chr20:2244866 1.19E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00980 - - bhj:120072732 480.33