Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00982 ATGGCGGCTTCATATCCCGATGATTTCAAGTGCCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGCTCTTCAATCCAACGCTGGCTCGACGCCGGTCATCGGACTTGTCCAATCACCCAATTGCCCCTTCCTGAAAACCCTTCTCTAATCCCTAACCATGCCCTCAGGAGCTTAATTTCAAATTTTAACCCTGTTTCCCTTTCCAAACCATTTCTTCCTCATCCGCCGCCCCAAACCCTAATCTCCATTCTCATCTCTCCGTCTGCCTCCCTCGATTCTAAGCTCGATTGCCTCAATCAACTCGCCAGGGTGTCAAAGCGCGATTCCGTTATGCGAAGAAAATTGACCGAGTCTGGTGCCGTCTCGGCTGTTCTTAAATGCGTTGGTTCTGACGATCCGACCCTCCAAGAGAAGGCCCTGTCGCTGTTACTGAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGGGCTATTGGTCTCACCGTCGCAGCTCTTCAAGCCAGGTCCCCTGATTGCAGAGCCGTAGCCGCCACGATGCTGACGAGCTTAGCCGTTGTGGAGGTCAACAAGGCTACAATTGGGGCATATCCCTACGCGATTCGCTCTCTTGTTGGTCTCTTACGATACGGCAACAACAGAGAGCAGAAGGAAGCAGCAACAGCGCTTTACGCCATCTGTTCATACCCTGGGAACCGTGTACGGACTGTGGAATGTGGGGCTGTTCCAATTCTGCTTGAAATTGCCAATTCGGGGCTGGATAGAGCAGTGGAGGTTCTGGGGCTTTTGGCCAAGTGTAGAGAAGGTCGAGAAGAGATGCAACGGTTCCACGGAAGTATGGAGATTTTGGGACGTGTGTTGAGAAATGGAGCCCCAAGAGGAGTTCAATACGCTCTTCTAACGCTGAGTTCGCTCTGCTGCCATAGCGAGCGAGCGTGCGTGGAAGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGACGATAACGAAAAGATCAGAGCAAATGCTGCAAAATTGATTCATATACTTCGAGGAAACAACGCATGA 1098 50.46 MAASYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPENPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSASLDSKLDCLNQLARVSKRDSVMRRKLTESGAVSAVLKCVGSDDPTLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIRSLVGLLRYGNNREQKEAATALYAICSYPGNRVRTVECGAVPILLEIANSGLDRAVEVLGLLAKCREGREEMQRFHGSMEILGRVLRNGAPRGVQYALLTLSSLCCHSERACVEARREGVLGICMTLIDDDNEKIRANAAKLIHILRGNNA 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6908528 6909625 - Cp4.1LG19g07620.1 Cpe19g00982 486390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00982 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Cpe19g00982 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Cpe19g00982 365 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Cpe19g00982 365 Gene3D - 269 365 IPR011989 -
Cpe19g00982 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Cpe19g00982 365 SMART arm_5 159 199 IPR000225 GO:0005515
Cpe19g00982 365 SMART arm_5 118 158 IPR000225 GO:0005515
Cpe19g00982 365 SMART arm_5 200 241 IPR000225 GO:0005515
Cpe19g00982 365 SMART arm_5 279 320 IPR000225 GO:0005515
Cpe19g00982 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Cpe19g00982 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515
Cpe19g00982 365 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
Cpe19g00982 365 Gene3D - 87 268 IPR011989 -
Cpe19g00982 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Cpe19g00982 365 CDD RING-Ubox_PUB 9 50 IPR045210 -
Cpe19g00982 365 SUPERFAMILY RING/U-box 4 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g00982 Cpe-Chr19:6908528 Cpe02g01239 Cpe-Chr2:11139117 3.47E-58 dispersed
Cpe10g00809 Cpe-Chr10:4588548 Cpe19g00982 Cpe-Chr19:6908528 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00982 - - csv:101213883 636.336