Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00983 ATGGGTGGAAATTGCAGGACGTTTGTTGGGTTTCTTCTGTTCTTCGTCATTTCATTCTTCCTCTGTTCTTCTCCTTTGTTTTGTGACGCTGCGAGTTCAATCACAAGGGGGACAGGTTTAAGAGACAGTAATAACGAGACCCTCATATCCGAAAATGAGTCCTACGAGATGGGTTTCTTCAGCCCTATAAATTCTTCATCACGATACGTTGGTATATGGTATCACAAGATCCCGGAACAGTCTGTTATTTGGGTTGCAAATAGGGACCAGCCACTTCTGAATAGAGATGGGGTTTTGAAGATCGGAGACGACGGGAACTTGGTCATTCTGGACGGCAACAACGTCTCTGTTTGGACAAGCAATATCACAGCGAATGCGTCTGATCTGAGGAACTTAACTCTGGGTAAAAATGGAGAATTGATTCTCTCGACCCACGACGAGCCGTCGAAAGTCCATTGGAGCAGCTTCGAACACCCTACAGATACATTTCTTCCGAATATGGTAGTGAAAGTGAACTCAGATTTGGGTGAGAAACGGATTTTTAGGTCGTGGAAATCAGAGACAAATCCGGCCGTCGGAAATTACAGTTTGGGTGTGGATCCTCTTGGAGCCGTACAGATTGTCATTTGGAATGGGAAAGATCGATGGTGGAGAAGCGGACACTGGGATAAGCAGATTTTTTCAGGGGTTCCGACCATGCGCTCAACGTCGTTGTATGGCTTCAAGGTTAACGCTGAGCGTCGAGACGAAATAACCTTGACTTTTCATCCATTGAATAACTCCGATAAGATGAAATTTCAAATACAGTGGGATGGTAAAGAAGCAGAGCAACGATGGAATGAAGCGAACCGCGTATGGGACACCATTCGTTTACTGCCTTCGAACGACTGCGATTTGTATAATTTTTGTGGGGATTTTGGGATTTGTTCTGAAACAAGTAGACCCAAGTGTAGTTGCCCTCATGGGTTTATACCCAAAAACAACGAGCAATGGAAGAGTGGGATTTGGTCAGATGGGTGTCAGAGGAAGACCCCATTGCTTCAGCAGAGGATGAATAGTAGTTCGAATGGCACTGTTGAAGATGGTAAAGAAGATGGGTTTGTGGCTGTACAGTTCGTGAAATTGCCTGATTTCATAACTGCAGTGTTTGTGGACTCTTGTGGAGATGAATGTGCGAACAGTTCTTCGTGTGTTGCATATTCGGATGCTCATGGAATTGGGTGTCTTACTTGGGATGGTCCCTTAATTGATATTCAGAAATTTGATGGTGTTGGGAATACTTTGAACATTCGTCTCGCTCATTCTGATTTGAATAACGAGACCAAATTGTCGACCGCTGCTATAGTATTGATATGTTTAGGAGGAGCAGTTGTTATAGCCATGTTAGCATTGCTGCTATGGAAATTCAGAGACAAAATGAAAGGTTCAGCAGCTGCTGCTTCGAATCCAGTTAAGCAGGTACTACTGGATTGGGAAAAACGGTTGTCAATCATGGAGGGAATTGCACGAGGACTGCTATATCTTCATCGAGACTCGAGATTACTAATCATTCATAGAGATTTGAAAGCCAGCAACATTTTGCTAGACGAAGACATGAATCCAAAGATATCGGACTTTGGCATGGCTAGAATATTTGGTGGAAACCAAAACGAGGCAACAAATACCATTCGAGTTGTTGGCACCGGTTACATGGCTCCCGAGTATGCAATGGAAGGTTTATTTTCGGTGAAATCAGACGTCTATAGTTTTGGTGTATTATTATTAGAGTTAATATGTGGTCGGAGGAACACTAGCTTTCGGTCAACCGAGTACTTAACCCTTATCAGCTATGCATGGAATCTTTGGAATGGAGGAAGAGCGATCGAACTTCTCGACCCGTCCATTCGGGATTCATCCCGAGAGGAGGAAGTATTGAAATGCATACATGTAGCAATGTTGTGTGTACAAGACTCCCCAGCATATAGACCAACAATGCAGTCCTTGGTGCTAATGCTGGAGAGTGAGTCTGCATCCCTTCCACAACCAAGACAACCTACCTATACTTCCACAAGAGCCTCGATCGACATCGACTTGTTTACCGATGGCCATGACGTTGTATCGTCGAACAACGTAACAGTGACAATGGTGGAGGGTAGATAA 2139 44.13 MGGNCRTFVGFLLFFVISFFLCSSPLFCDAASSITRGTGLRDSNNETLISENESYEMGFFSPINSSSRYVGIWYHKIPEQSVIWVANRDQPLLNRDGVLKIGDDGNLVILDGNNVSVWTSNITANASDLRNLTLGKNGELILSTHDEPSKVHWSSFEHPTDTFLPNMVVKVNSDLGEKRIFRSWKSETNPAVGNYSLGVDPLGAVQIVIWNGKDRWWRSGHWDKQIFSGVPTMRSTSLYGFKVNAERRDEITLTFHPLNNSDKMKFQIQWDGKEAEQRWNEANRVWDTIRLLPSNDCDLYNFCGDFGICSETSRPKCSCPHGFIPKNNEQWKSGIWSDGCQRKTPLLQQRMNSSSNGTVEDGKEDGFVAVQFVKLPDFITAVFVDSCGDECANSSSCVAYSDAHGIGCLTWDGPLIDIQKFDGVGNTLNIRLAHSDLNNETKLSTAAIVLICLGGAVVIAMLALLLWKFRDKMKGSAAAASNPVKQVLLDWEKRLSIMEGIARGLLYLHRDSRLLIIHRDLKASNILLDEDMNPKISDFGMARIFGGNQNEATNTIRVVGTGYMAPEYAMEGLFSVKSDVYSFGVLLLELICGRRNTSFRSTEYLTLISYAWNLWNGGRAIELLDPSIRDSSREEEVLKCIHVAMLCVQDSPAYRPTMQSLVLMLESESASLPQPRQPTYTSTRASIDIDLFTDGHDVVSSNNVTVTMVEGR 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6910868 6914596 - Cp4.1LG19g07550.1 Cpe19g00983 486391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00983 712 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 482 689 - -
Cpe19g00983 712 Pfam Protein tyrosine and serine/threonine kinase 486 663 IPR001245 GO:0004672|GO:0006468
Cpe19g00983 712 CDD PAN_AP_plant 360 433 - -
Cpe19g00983 712 Gene3D Transferase(Phosphotransferase) domain 1 478 682 - -
Cpe19g00983 712 CDD EGF_CA 295 327 - -
Cpe19g00983 712 Pfam Domain of unknown function (DUF3403) 667 712 IPR021820 GO:0004674
Cpe19g00983 712 PANTHER - 482 689 - -
Cpe19g00983 712 SMART serkin_6 416 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00983 712 PANTHER - 17 470 - -
Cpe19g00983 712 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 190 IPR036426 -
Cpe19g00983 712 ProSiteProfiles Protein kinase domain profile. 345 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g00983 712 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Cpe19g00983 712 Pfam S-locus glycoprotein domain 217 327 IPR000858 GO:0048544
Cpe19g00983 712 Pfam D-mannose binding lectin 82 185 IPR001480 -
Cpe19g00983 712 PIRSF SRK 5 486 IPR024171 GO:0004674
Cpe19g00983 712 PIRSF SRK 481 712 IPR024171 GO:0004674
Cpe19g00983 712 SUPERFAMILY Protein kinase-like (PK-like) 485 691 IPR011009 -
Cpe19g00983 712 CDD B_lectin 43 159 IPR001480 -
Cpe19g00983 712 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-13 17 470 - -
Cpe19g00983 712 SMART blect_4 39 159 IPR001480 -
Cpe19g00983 712 ProSiteProfiles Bulb-type lectin domain profile. 33 155 IPR001480 -
Cpe19g00983 712 Pfam PAN-like domain 363 418 IPR003609 -
Cpe19g00983 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 516 528 IPR008271 GO:0004672|GO:0006468
Cpe19g00983 712 Gene3D - 28 156 IPR036426 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00589 Cpe-Chr17:4880840 Cpe19g00983 Cpe-Chr19:6910868 5.05E-14 dispersed
Cpe19g00983 Cpe-Chr19:6910868 Cpe20g00399 Cpe-Chr20:2267237 5.47E-07 dispersed
Cpe01g00049 Cpe-Chr1:317100 Cpe19g00983 Cpe-Chr19:6910868 4.53E-46 transposed
Cpe10g00810 Cpe-Chr10:4590262 Cpe19g00983 Cpe-Chr19:6910868 0 wgd
Cpe15g00772 Cpe-Chr15:7885245 Cpe19g00983 Cpe-Chr19:6910868 3.37E-63 wgd
Cpe16g00466 Cpe-Chr16:5822759 Cpe19g00983 Cpe-Chr19:6910868 2.84E-48 wgd
Cpe19g00983 Cpe-Chr19:6910868 Cpe20g00398 Cpe-Chr20:2246374 1.26E-17 wgd
Cpe19g00983 Cpe-Chr19:6910868 Cpe06g00729 Cpe-Chr6:4563309 3.48E-19 wgd
Cpe19g00983 Cpe-Chr19:6910868 Cpe09g00875 Cpe-Chr9:8015940 7.56E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63058 PF07714 PK_Tyr_Ser-Thr 3.10E-27 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00983 - - csv:101207147 759.599