Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01019 ATGGAGAAGGAGGCTAATTCTTGGCTTAGGAGAACCAAGTTCTCTCACACAGTTTATCATCGATGGGACTCGTTAAGATTGACCCCTGTTCCTTTCACCATCGAACCACCTCGCCATTCTGGCTTGAAATCGAGGCCTCAATCAACTTCATCACCCCAGAAACCAAATCCTGATATTTCGAAGATTCAACCAAGTTTCATATCCAACAAGAAGAGGTATCTGTCTCCTCTTCCCACCAGCAACCTCTCTGACGTTTTCAGGGAAGCAAAATCCGAGAGTAAGAGATTCTCAACACCAACTCCTCGTCTTAGAGAACAAACGAAGGAATTCAAGAACATGAACCCTCAAGTTTCTAAATCTGCCAATTTCAAGCCGTCTTTGAATACCAGTCCACTGAAACACCTAGTTACGGCAAAACGAGGTGATAAGTCAAAGCCCCGGAAGGACTCATCCTGGACCAAATATTTCGAGTCCGGTGGTGGAAGAGTCACCGCAGTCGAAACGGTTGATGACTGGAGTGTTGATCTCTCTGAGTTGTTTCTCGGGTTAAGGTTTGCTCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAAGGACAAACCTGTTGCTGTTAAAATTATTCGACAGCCTGAGGATGACGAAAATGGAGTTCTTGCTTCGAGATTGGAGAAGCAATTTACCAGAGAAGTTTCCCTTTTATCTCGTCTCAATCATCCGAACGTTTTAAAGTTTGTAGCTGCCTGTAGGAAGCCACCAGTTCACTGTGTCATTACCGAATATTTGTCTCAAGGATCATTAAGAGCATACTTGCACAAACTTGAGCACCAATCTCTTCCTATGCGAAAACTAATTGCAATGGCTTTAGATGTCGCTCATGGCATGGAATATATTCATTCACAAGGCGTAATTCATCGTGATCTTAAACCCGAAAATGTTCTTATTGACGAGGACTTCCACCTGAAAATTGCAGATTTTGGTATAGCTTGTCCTGATGCCTTTCTCGACCCATTGGCTGACGATCCTGGTACTTATCGATGGATGGCACCGGAGATGATTAAACATAAACCCTATGGTCGAAAGGTCGACGTGTACAGCTTCGGGCTTATGTTGTGGGAAATGGTGGCTGGTGCAATTCCTTACCAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAACAAGAATCTTAGGCCTGTTATCTCAAGTGATTGTACGTTGGCAATGCGAGCACTGATCGAGCAATGTTGGTCTGTAAATCCAGATAAGAGACCCGATTTCTGGCAGGTTGTGAAGGTATTAGAGAAATTCGAGTATTCGCTTGCCCATGATGGGACACTCAATTTAGTAGGAAATCCTCTGTCTAGTTTTCATCTAGACCATAAGAAAGGAGGGCCACTCCATTGGATTCAAAAGCTTGCCCCCCTACATCCTGAACCCTCACCCCGCCCCAAACCCAAATTCTCATGA 1473 44.4 MEKEANSWLRRTKFSHTVYHRWDSLRLTPVPFTIEPPRHSGLKSRPQSTSSPQKPNPDISKIQPSFISNKKRYLSPLPTSNLSDVFREAKSESKRFSTPTPRLREQTKEFKNMNPQVSKSANFKPSLNTSPLKHLVTAKRGDKSKPRKDSSWTKYFESGGGRVTAVETVDDWSVDLSELFLGLRFAHGAHSRLYHGKYKDKPVAVKIIRQPEDDENGVLASRLEKQFTREVSLLSRLNHPNVLKFVAACRKPPVHCVITEYLSQGSLRAYLHKLEHQSLPMRKLIAMALDVAHGMEYIHSQGVIHRDLKPENVLIDEDFHLKIADFGIACPDAFLDPLADDPGTYRWMAPEMIKHKPYGRKVDVYSFGLMLWEMVAGAIPYQDMTPIQAAFAVVNKNLRPVISSDCTLAMRALIEQCWSVNPDKRPDFWQVVKVLEKFEYSLAHDGTLNLVGNPLSSFHLDHKKGGPLHWIQKLAPLHPEPSPRPKPKFS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7105612 7108627 - Cp4.1LG19g07180.1 Cpe19g01019 486427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01019 490 CDD STKc_MAP3K-like 186 435 - -
Cpe19g01019 490 ProSiteProfiles Protein kinase domain profile. 179 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g01019 490 SMART serkin_6 179 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g01019 490 Gene3D Transferase(Phosphotransferase) domain 1 264 449 - -
Cpe19g01019 490 Gene3D Phosphorylase Kinase; domain 1 167 263 - -
Cpe19g01019 490 PRINTS Tyrosine kinase catalytic domain signature 259 272 IPR001245 GO:0004672|GO:0006468
Cpe19g01019 490 PRINTS Tyrosine kinase catalytic domain signature 297 315 IPR001245 GO:0004672|GO:0006468
Cpe19g01019 490 PRINTS Tyrosine kinase catalytic domain signature 343 353 IPR001245 GO:0004672|GO:0006468
Cpe19g01019 490 PRINTS Tyrosine kinase catalytic domain signature 362 384 IPR001245 GO:0004672|GO:0006468
Cpe19g01019 490 PRINTS Tyrosine kinase catalytic domain signature 406 428 IPR001245 GO:0004672|GO:0006468
Cpe19g01019 490 PANTHER TYROSINE KINASE FAMILY PROTEIN 4 462 - -
Cpe19g01019 490 SUPERFAMILY Protein kinase-like (PK-like) 162 435 IPR011009 -
Cpe19g01019 490 MobiDBLite consensus disorder prediction 117 133 - -
Cpe19g01019 490 MobiDBLite consensus disorder prediction 117 151 - -
Cpe19g01019 490 Pfam Protein tyrosine and serine/threonine kinase 185 435 IPR001245 GO:0004672|GO:0006468
Cpe19g01019 490 MobiDBLite consensus disorder prediction 33 63 - -
Cpe19g01019 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Cpe19g01019 490 MobiDBLite consensus disorder prediction 42 63 - -
Cpe19g01019 490 MobiDBLite consensus disorder prediction 136 151 - -
Cpe19g01019 490 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 4 462 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g01019 Cpe-Chr19:7105612 Cpe20g00236 Cpe-Chr20:1347646 1.77E-113 dispersed
Cpe10g00193 Cpe-Chr10:1119287 Cpe19g01019 Cpe-Chr19:7105612 0 wgd
Cpe19g01019 Cpe-Chr19:7105612 Cpe20g00437 Cpe-Chr20:2510681 0 wgd
Cpe19g01019 Cpe-Chr19:7105612 Cpe09g00837 Cpe-Chr9:7723890 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63059 PF07714 PK_Tyr_Ser-Thr 2.30E-60 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01019 - - csv:101204268 825.083