Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01041 ATGGCTGCTCTTATCGATCTCAATACCACTGAAGAAGACGATGCTCCCTCCTCTGCTGCTTCCTCTGCTTCCTCTTCCTCTGCTTCTGCTTTAACCTCCTCCCCTTCGCCTTCTCTCACCTCCTCAATTTGCTTGGAGCTGTGGCATGCCTGTGCTGGACCTCTTACGTCCTTGCCCAACAAAGGGAGTTTGGTTGTGTATTTTCCACAGGGCCACTTGGAGCAGATGCAAGAGTTCCCTGCCACGGCGGCCTATGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCACGCTGAGGCTGGGAGTGACGAGGTTTATGCTCAAGTCTCATTGTTTCCTGAAAACGAGCCCATTGAACACAAAATGCAGGAAGAGATGACCAATGACAGTGAGGGGGAGGATTTTGAAGGAAGTGAGAAGACCACAACACCCCACATGTTCTGCAAGACACTTACTGCTTCAGACACTAGCACTCATGGAGGCTTCTCCGTCCCCAGACGTGCAGCTGAGGATTGCTTCCCGCCATTGGATTATAGTCAACAGAGGCCTTCACAAGAGCTAGTTGCAAAGGATCTCCTTGGGATTAAATGGAAGTTTAGGCACATATATCGCGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCATTCGTGAACAAGAAAAGGCTCGTTTCTGGTGATGCAGTGCTGTTTCTTAGGGGCAACGATGGGGAATTACGACTCGGGATTCGACGAGCTGCGCAGCTTAAAAGCGGTTCTCCCTTTTCTAACATTTGCAGTCAGCAACTCAACTCTAGTAGTATCATGGATGTGTTTAATGCTATATCTTCAAAAACTTCCTTTAGCGTATACTATAATCCCAGGGCTACCTCTTCACAGTTTGTCTTGCCTTTCCACAAGTTCTTGAAAAGCATTAACCATTCCTTCTCTGCTGGAATGAGGTTCAGCTTGAGTTTCGAAACCGACGATGCTGCAGATCGAAGATGCACTGGACGTATAACTGGAGTTGGAGATGTGGATCCTATCAGATGGCCTGGGTCAAGGTGGAGGTCCCTTGTGGTGAGGTGGGACGATGTGGAAACTAAAAGACATGGCAGGGTTTCCCCGTGGGAGATCGAGCCCTCAGGTTCTGTTTCTGTGGCTAGTAACGTGGTTCCACCGGGTTTAAAAAGGACCAGGATTGGGCTCTCTCCCACAGAACTAGAGTTTCCAGTTCCAAATGGAATTGGAGCATCAGACTTTGGGGAATCATTAAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGTTACAGTACTCCCATTGATGGCGACGACAACATTCGTCATCCACCGGAGAAGAGGAGATCATTTCCTGGTTTACTCGGTTCAGGGATAGCTCTAATGAGAAATGGTCCAAGAATCCCAGTTACCAACTCTGAAACTTCCTCCCGGGGTTTCATGTTTGATGAATCCTTCCAATTCCATAAGGTCTTGCAAGGTCAAGAAATGTATCCTAGTCCATTTTTTGGAATAGCCACTGCCACCAATGAAGTCAAGGCAAGTGGTGGTTATGGTCCTGTGGACAGTGTTCCACTGTCTAGATCTAAAGATGGATGGCCCATGACAATGCAGAGTGAAAACTTCCTCACACGCTCTTCCATTCCTTCTGTACAAGTCTCATCACCATCATCTGTGTTCATGTTTCAGCAGTCAATGGTTCCTGTTCCAAGCTTTAATTCATATAACCGTGGCAATTTCACAGAACAGAGGACTATGAACAAGAGCACCTCCCATAATTCTGGGACAGCTTTTATGACTGACCACAACTCAAGCACTGAAGTCCCACAAGGCATGCGCCCCACTTCATTGGGCGTGCAGAAGCAGCTCGGCCTATCACATCCTTCTACAACAGAACCAGCGTTTACTGGCAATAAAGCTGGATGTAGATTGTTTGGTTTTTCATTAACAGAAGGAAAGAATGTTGGGAATACAACAGACAAGGCTTCTCCAGCAACAACTCCAATTAATGCAGGAACTACCTCTGTGTTGTCCTCCAATAGTGGACTACGTTGTCCTTTGAAGTCTCCACTGATGAACAAGGTGGTTGGAAGCAACTGTACCAAAGGGGCTGTCCAGTATCATTTTGCAAATTGCAGTACCTACTACTGA 2172 47.28 MAALIDLNTTEEDDAPSSAASSASSSSASALTSSPSPSLTSSICLELWHACAGPLTSLPNKGSLVVYFPQGHLEQMQEFPATAAYDLPPHILCRVIDVQLHAEAGSDEVYAQVSLFPENEPIEHKMQEEMTNDSEGEDFEGSEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKSGSPFSNICSQQLNSSSIMDVFNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSLVVRWDDVETKRHGRVSPWEIEPSGSVSVASNVVPPGLKRTRIGLSPTELEFPVPNGIGASDFGESLRFQKVLQGQEILGYSTPIDGDDNIRHPPEKRRSFPGLLGSGIALMRNGPRIPVTNSETSSRGFMFDESFQFHKVLQGQEMYPSPFFGIATATNEVKASGGYGPVDSVPLSRSKDGWPMTMQSENFLTRSSIPSVQVSSPSSVFMFQQSMVPVPSFNSYNRGNFTEQRTMNKSTSHNSGTAFMTDHNSSTEVPQGMRPTSLGVQKQLGLSHPSTTEPAFTGNKAGCRLFGFSLTEGKNVGNTTDKASPATTPINAGTTSVLSSNSGLRCPLKSPLMNKVVGSNCTKGAVQYHFANCSTYY 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7200777 7205679 - Cp4.1LG19g06940.1 Cpe19g01041 486449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01041 723 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 715 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe19g01041 723 Gene3D - 149 253 IPR015300 -
Cpe19g01041 723 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Cpe19g01041 723 PANTHER AUXIN RESPONSE FACTOR 3 34 715 - -
Cpe19g01041 723 MobiDBLite consensus disorder prediction 1 36 - -
Cpe19g01041 723 CDD B3_DNA 149 251 IPR003340 GO:0003677
Cpe19g01041 723 Pfam B3 DNA binding domain 151 252 IPR003340 GO:0003677
Cpe19g01041 723 MobiDBLite consensus disorder prediction 11 36 - -
Cpe19g01041 723 SMART B3_2 151 253 IPR003340 GO:0003677
Cpe19g01041 723 Pfam Auxin response factor 278 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe19g01041 723 Gene3D - 314 388 - -
Cpe19g01041 723 SUPERFAMILY DNA-binding pseudobarrel domain 145 259 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00168 Cpe19g01041 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00832 Cpe-Chr5:5149587 Cpe19g01041 Cpe-Chr19:7200777 5.47E-155 dispersed
Cpe16g00547 Cpe-Chr16:6316397 Cpe19g01041 Cpe-Chr19:7200777 1.29E-128 dispersed
Cpe19g01041 Cpe-Chr19:7200777 Cpe20g00545 Cpe-Chr20:3182872 3.36E-106 dispersed
Cpe10g00168 Cpe-Chr10:1007566 Cpe19g01041 Cpe-Chr19:7200777 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51056 PF02362 B3 1.90E-21 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01041 K14486 - csv:101220018 1181.78