Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01046 ATGGCTTCCTCAAACAGACACTGGCCTAGCATGTTCAAGTCCAAGCCCTGCAATTCTCACCACCAATGGCAGCATGACATCAACCCAAATCTCTCTTCTTCCACTGCCACTTGCCTCAGATCTGCTCCTTATGCTACAGTTGGTGGGTGTGAAGAGAGGAGTCCAGAGCCAAAACCAAGATGGAATCCAAAACCAGAACAAATTCGGATTCTTGAAGCAATTTTCAATTCCGGGATGGTGAATCCTCCAAGAGATGAAATTAGAAAAATTAGAGCTCAATTGCAGGAATATGGACAAGTGGGTGATGCTAATGTTTTTTATTGGTTTCAAAACAGAAAATCAAGAAGCAAAAGCAAACTCCGCCATATCCAAAACTCCAAATCCAATAATAATCACAATTCCCAAACCACCACTGCTCCTTTACCATCTCCTATGCCTCCCATCGCCACTGCCACCATCACCGCCGCCACAACTTGTTCTTCCTCTTCTTCTTCCGACAAATCTTCTCCAATATCAGCACCCATCAAAACTTTTAGCTCCAATTCAATGACCCAGAACTACCTTCCACAACTCACCAACGAGCTCTTGCCTGAACCTTTTTTCTTCCCGGCGTCACAGACCGGCGGCGGTGGCAGCGGTGGAAGCTCTAATTTGAGTCAAGGGTTTTGCTTGTCGGAGCTTTGTAGTGTAGTGCAGCAAGTGCCTGAAGATGGGGTTGTTGGGCCTTGCACAAGCCTGTTGCTGAGTGAGATTATGAACCCAACTGAGGCTTCAAAAAAAGATTTGGATGAGGACAAGATCACGGTGAAGTTGCCGCCTCCGTTCATGAATTATCATCCTGTTTTCACTCCCTCCACTGATAACATTCTTCCACCAACCACTATTTCCACCGCCCTCACCACTCTTCCACCTCCTTCCCATACAATTCATCAAGGTGTAGGTGAAGTTTATGGATTAGGTCAAAGCTGTGTAGGGAAGTCAACAGTGTTCATCAATGGTGTGGCGTTCGAGGTGGGTTCTGGTGCGTTCAATGTTCGGGAGGCTTTTGGTGATGAAGCTGTTCTGCTTCACTCCTCTGGTCAGCCTGTTCTCACTAATGAATGGGGCCTCACTCTCCACTCACTCCAACATGGCGCCTCTTATTATCTTATATAA 1155 46.49 MASSNRHWPSMFKSKPCNSHHQWQHDINPNLSSSTATCLRSAPYATVGGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKSKLRHIQNSKSNNNHNSQTTTAPLPSPMPPIATATITAATTCSSSSSSDKSSPISAPIKTFSSNSMTQNYLPQLTNELLPEPFFFPASQTGGGGSGGSSNLSQGFCLSELCSVVQQVPEDGVVGPCTSLLLSEIMNPTEASKKDLDEDKITVKLPPPFMNYHPVFTPSTDNILPPTTISTALTTLPPPSHTIHQGVGEVYGLGQSCVGKSTVFINGVAFEVGSGAFNVREAFGDEAVLLHSSGQPVLTNEWGLTLHSLQHGASYYLI 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7227905 7230136 - Cp4.1LG19g06930.1 Cpe19g01046 486454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01046 384 Pfam Homeodomain 58 117 IPR001356 GO:0003677
Cpe19g01046 384 CDD homeodomain 57 119 IPR001356 GO:0003677
Cpe19g01046 384 Gene3D - 58 124 - -
Cpe19g01046 384 SMART HOX_1 56 123 IPR001356 GO:0003677
Cpe19g01046 384 MobiDBLite consensus disorder prediction 118 148 - -
Cpe19g01046 384 MobiDBLite consensus disorder prediction 123 139 - -
Cpe19g01046 384 ProSiteProfiles 'Homeobox' domain profile. 54 119 IPR001356 GO:0003677
Cpe19g01046 384 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 384 - -
Cpe19g01046 384 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 384 IPR044557 GO:0003700|GO:0050793
Cpe19g01046 384 SUPERFAMILY Homeodomain-like 54 121 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00163 Cpe19g01046 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00402 Cpe-Chr3:2209479 Cpe19g01046 Cpe-Chr19:7227905 1.85E-16 dispersed
Cpe08g01378 Cpe-Chr8:9902855 Cpe19g01046 Cpe-Chr19:7227905 3.61E-16 dispersed
Cpe19g01046 Cpe-Chr19:7227905 Cpe20g00149 Cpe-Chr20:844047 1.15E-17 dispersed
Cpe10g00163 Cpe-Chr10:978616 Cpe19g01046 Cpe-Chr19:7227905 2.03E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51058 PF00046 Homeodomain 1.80E-14 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01046 - - bhj:120074379 575.474