Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01046 ATGGCTTCCTCAAACAGACACTGGCCTAGCATGTTCAAGTCCAAGCCCTGCAATTCTCACCACCAATGGCAGCATGACATCAACCCAAATCTCTCTTCTTCCACTGCCACTTGCCTCAGATCTGCTCCTTATGCTACAGTTGGTGGGTGTGAAGAGAGGAGTCCAGAGCCAAAACCAAGATGGAATCCAAAACCAGAACAAATTCGGATTCTTGAAGCAATTTTCAATTCCGGGATGGTGAATCCTCCAAGAGATGAAATTAGAAAAATTAGAGCTCAATTGCAGGAATATGGACAAGTGGGTGATGCTAATGTTTTTTATTGGTTTCAAAACAGAAAATCAAGAAGCAAAAGCAAACTCCGCCATATCCAAAACTCCAAATCCAATAATAATCACAATTCCCAAACCACCACTGCTCCTTTACCATCTCCTATGCCTCCCATCGCCACTGCCACCATCACCGCCGCCACAACTTGTTCTTCCTCTTCTTCTTCCGACAAATCTTCTCCAATATCAGCACCCATCAAAACTTTTAGCTCCAATTCAATGACCCAGAACTACCTTCCACAACTCACCAACGAGCTCTTGCCTGAACCTTTTTTCTTCCCGGCGTCACAGACCGGCGGCGGTGGCAGCGGTGGAAGCTCTAATTTGAGTCAAGGGTTTTGCTTGTCGGAGCTTTGTAGTGTAGTGCAGCAAGTGCCTGAAGATGGGGTTGTTGGGCCTTGCACAAGCCTGTTGCTGAGTGAGATTATGAACCCAACTGAGGCTTCAAAAAAAGATTTGGATGAGGACAAGATCACGGTGAAGTTGCCGCCTCCGTTCATGAATTATCATCCTGTTTTCACTCCCTCCACTGATAACATTCTTCCACCAACCACTATTTCCACCGCCCTCACCACTCTTCCACCTCCTTCCCATACAATTCATCAAGGTGTAGGTGAAGTTTATGGATTAGGTCAAAGCTGTGTAGGGAAGTCAACAGTGTTCATCAATGGTGTGGCGTTCGAGGTGGGTTCTGGTGCGTTCAATGTTCGGGAGGCTTTTGGTGATGAAGCTGTTCTGCTTCACTCCTCTGGTCAGCCTGTTCTCACTAATGAATGGGGCCTCACTCTCCACTCACTCCAACATGGCGCCTCTTATTATCTTATATAA 1155 46.49 MASSNRHWPSMFKSKPCNSHHQWQHDINPNLSSSTATCLRSAPYATVGGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKSKLRHIQNSKSNNNHNSQTTTAPLPSPMPPIATATITAATTCSSSSSSDKSSPISAPIKTFSSNSMTQNYLPQLTNELLPEPFFFPASQTGGGGSGGSSNLSQGFCLSELCSVVQQVPEDGVVGPCTSLLLSEIMNPTEASKKDLDEDKITVKLPPPFMNYHPVFTPSTDNILPPTTISTALTTLPPPSHTIHQGVGEVYGLGQSCVGKSTVFINGVAFEVGSGAFNVREAFGDEAVLLHSSGQPVLTNEWGLTLHSLQHGASYYLI 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7227905 7230136 - Cp4.1LG19g06930.1 Cpe19g01046 486454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01046 384 Pfam Homeodomain 58 117 IPR001356 GO:0003677
Cpe19g01046 384 CDD homeodomain 57 119 IPR001356 GO:0003677
Cpe19g01046 384 Gene3D - 58 124 - -
Cpe19g01046 384 SMART HOX_1 56 123 IPR001356 GO:0003677
Cpe19g01046 384 MobiDBLite consensus disorder prediction 118 148 - -
Cpe19g01046 384 MobiDBLite consensus disorder prediction 123 139 - -
Cpe19g01046 384 ProSiteProfiles 'Homeobox' domain profile. 54 119 IPR001356 GO:0003677
Cpe19g01046 384 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 384 - -
Cpe19g01046 384 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 384 IPR044557 GO:0003700|GO:0050793
Cpe19g01046 384 SUPERFAMILY Homeodomain-like 54 121 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01046 - - - bhj:120074379 575.474
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00163 Cpe19g01046 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00402 Cpe-Chr3:2209479 Cpe19g01046 Cpe-Chr19:7227905 1.85E-16 dispersed
Cpe08g01378 Cpe-Chr8:9902855 Cpe19g01046 Cpe-Chr19:7227905 3.61E-16 dispersed
Cpe19g01046 Cpe-Chr19:7227905 Cpe20g00149 Cpe-Chr20:844047 1.15E-17 dispersed
Cpe10g00163 Cpe-Chr10:978616 Cpe19g01046 Cpe-Chr19:7227905 2.03E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g165 . . Bda02g00504 . . Bpe01g00455 . . . . Cma03g01305 Cma07g00209 Car03g01165 Car07g00176 . . Cpe10g00163 Bhi03g00342 . . . . . . Cla01g02289 Cam01g2401 Cec04g2047 Cco04g2125 Clacu01g2422 Cmu01g2286 Cre04g1954 . . Cone6ag0982 Cone9ag0982 Lsi01g00272 Csa06g03668 . Cme08g00256 . Blo14g00416 . . . . . . . Cmo03g01301 Cmo07g00209 . . . . Cpe19g01046 . . . . . . . . . . . . . . . . . Chy02g00262 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01115 CCT,ECH 3 180 Wox Gene Family AT3G18010 56.9 8.0e-48 188.3
Cpe20g00149 CCT,CST,ECH 1 191 Wox Gene Family AT3G18010 55.4 4.4e-46 182.6
Cpe04g01371 CCT,CST,ECH 1 165 Wox Gene Family AT3G18010 53.8 2.1e-40 163.7
Cpe14g01056 . 1 274 Wox Gene Family AT4G35550 51.9 6.1e-72 268.1
Cpe06g00017 CCT 1 191 Wox Gene Family AT4G35550 61.0 2.7e-56 216.1
Cpe02g00030 CCT 238 399 Wox Gene Family AT4G35550 66.9 3.3e-54 209.1
Cpe02g00030 CCT 275 406 Wox Gene Family AT1G20700 58.5 6.7e-39 157.9
Cpe07g00494 CCT 5 138 Wox Gene Family AT1G46480 62.2 5.5e-43 171.4
Cpe19g01046 CCT 1 384 Wox Gene Family AT2G33880 50.7 3.4e-68 256.1
Cpe09g01115 CCT,ECH 3 180 Wox Gene Family AT3G18010 56.9 8.0e-48 188.3
Cpe20g00149 CCT,CST,ECH 1 191 Wox Gene Family AT3G18010 55.4 4.4e-46 182.6
Cpe04g01371 CCT,CST,ECH 1 165 Wox Gene Family AT3G18010 53.8 2.1e-40 163.7
Cpe07g00494 CCT 5 138 Wox Gene Family AT1G46480 62.2 5.5e-43 171.4
Cpe19g01046 CCT 1 384 Wox Gene Family AT2G33880 50.7 3.4e-68 256.1
Cpe14g01056 . 1 274 Wox Gene Family AT4G35550 51.9 6.1e-72 268.1
Cpe06g00017 CCT 1 191 Wox Gene Family AT4G35550 61.0 2.7e-56 216.1
Cpe02g00030 CCT 238 399 Wox Gene Family AT4G35550 66.9 3.3e-54 209.1
Cpe02g00030 CCT 275 406 Wox Gene Family AT1G20700 58.5 6.7e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008426 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51058 PF00046 Homeodomain 1.80E-14 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g01046 Cpe_Chr19 FPKM 9.636521 11.608164 6.10733 7.315595 12.078381 10.442596 11.880237 8.792813 8.07335 8.636148