Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01052 ATGAGCACCGGATTGCCTTCATCTTTACTACTACGACTTCAGAAAGCTGGACCAGTTGTCTACTTCCTTCTCTTTCAAAATTGGAGTGCCTATGCTTATGCATTAGACCAGACATGGGATTTTGAAATTGGTTGTATAGTGAGCATGGGTTCTGGAGACTGGTTTAAGACTGTAATTCGCTTAAGGAAAGTAAAAACCAGCAGTTCAAAACATGCTAAGGAGAAATCACATGCTTTGAAATCGAATAATCTGGAAAAGGATTCCTCGAAGGTTAAAAAGAGTGGTACCAATGGGAGCAACAAGTCTCTTGGGATGCCAATTGAAGATGTAGCTGCAGTTCGGATTCAGACTGCATATCGAGCTTATCGTGCCAGGAAAATTTTACGTCGCTTGAAAGGAGCTGTGAGACTGCAGAATCTGACTCAAGGCCACTCTGTTAGAAGGCATGCTACATCTACAATAAGTTATCTTCATTCATGGAGCAATATACAGGCTCAAATTAGGGCTCGTCGAATCTGTATGGTGACTGAAGGACGCCTCAAACAAAAGAGATTGGAGAATCAACGAAAACTTGAGACTAAACTTCATGATATTGAGGTAGAGTGGTGTGGCGGTGCAGACACCATGGAGGAGATTCTTTCAAGGGTACACGAGAGAGAAGAAGCAGCTGTTAAGCGTGAACGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAGTGAGATGTATGGACTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATTGCTGCTCGTCCATGGGAGAGCCGCGTACCATCTAAGTTAGTTACTCCAAAGAAATCGACAATGAGACAATCAAGCAAAGCCAGTAAGAAAAGCTCTCCATCCCCAAAAGCAAGAGTTTTGGTTAAACCTCCTTCCCCGAATGGAAAATCAACTCCAAAGGCTCGAAGGTTGTCGTATCCAGCAACCGAAAAAACCGAGAAACTGGCTACAGAAGAAAAGGGCATCAAGAAAAGCGTTAAAGATGATGAAGCAAACACTAAGAAAGAAGAAACAACGCTATCGAAACCATCCCTCTACATTACACAGATCCCAAAACTCATGGAATCTTCGTCGGACTCTTCTGGGTGCTCAAGAAGGCTAGTCGCTTTGGCACAGCAACTCCGCCTTTACAAGCCGCCGCCATTGTTGGATGACATAGATGAGCCAAGCAGTGAGGAGAGCAATGGAAAGGTTGTTTCTCAAGTGGGTTTCCCGGAATCGGCCACCCCAATTTCCCGAGACCCAGAGAGATTCAGACCCAAGAAAGCGGCTGTGTTGATCTGCCTTTTTGAAGGGAAGGATGGCGATCTTCGGGTCATTCTCACCAAGCGATCCTCGAGGTTGTCTACTCACTCGGGTGAAATTGCATTGCCTGGAGGAAAAGCAGAGGAAGGAGATGAAGACGATGGGGCGACTGCGACGAGAGAAGCGGAGGAGGAAATTGGTTTGGATCCTTCGCTTGTAAATGTTGTTTCGGTTCTTGAGCCATTCTTGTCAAAGCATCTCCTAAGAGTGGTTCCTGTTATAGGCATTATGACTGACAGAAATGCATTCATTCCCAGACCAAATCCTGCTGAAGTGGAAGAAGTATTCGACGCTCCACTTGATATGTTCATTAAGGATGAAAATCGGAGATCAGAGGAAAGAGAGTGGATGGGATGCAAATACCTTGTTCATTTCTTTGACTATGAAACCGAGAACAAGAAGTATGTGATATGGGGTTTAACTGCTGGGATCTTGATAAGGGCTGCATCAATAGTACTCCAGAGTTCACCACCTTTTCTGGAGCAAAACCCTATCTTCAAGGTTCCAAGGGTTGTAGCCAAAGATACAATTATGTCTTAA 1905 44.72 MSTGLPSSLLLRLQKAGPVVYFLLFQNWSAYAYALDQTWDFEIGCIVSMGSGDWFKTVIRLRKVKTSSSKHAKEKSHALKSNNLEKDSSKVKKSGTNGSNKSLGMPIEDVAAVRIQTAYRAYRARKILRRLKGAVRLQNLTQGHSVRRHATSTISYLHSWSNIQAQIRARRICMVTEGRLKQKRLENQRKLETKLHDIEVEWCGGADTMEEILSRVHEREEAAVKRERAMAYAFSHQWRANSSEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSKLVTPKKSTMRQSSKASKKSSPSPKARVLVKPPSPNGKSTPKARRLSYPATEKTEKLATEEKGIKKSVKDDEANTKKEETTLSKPSLYITQIPKLMESSSDSSGCSRRLVALAQQLRLYKPPPLLDDIDEPSSEESNGKVVSQVGFPESATPISRDPERFRPKKAAVLICLFEGKDGDLRVILTKRSSRLSTHSGEIALPGGKAEEGDEDDGATATREAEEEIGLDPSLVNVVSVLEPFLSKHLLRVVPVIGIMTDRNAFIPRPNPAEVEEVFDAPLDMFIKDENRRSEEREWMGCKYLVHFFDYETENKKYVIWGLTAGILIRAASIVLQSSPPFLEQNPIFKVPRVVAKDTIMS 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7252482 7257858 + Cp4.1LG19g07090.1 Cpe19g01052 486460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01052 634 CDD CoAse 441 601 IPR045121 GO:0010945
Cpe19g01052 634 ProSiteProfiles Nudix hydrolase domain profile. 440 596 IPR000086 -
Cpe19g01052 634 SUPERFAMILY Nudix 439 600 IPR015797 -
Cpe19g01052 634 PANTHER NUDIX HYDROLASE 381 627 IPR045121 GO:0010945
Cpe19g01052 634 MobiDBLite consensus disorder prediction 471 498 - -
Cpe19g01052 634 MobiDBLite consensus disorder prediction 71 92 - -
Cpe19g01052 634 Pfam NUDIX domain 441 556 IPR000086 -
Cpe19g01052 634 MobiDBLite consensus disorder prediction 326 357 - -
Cpe19g01052 634 MobiDBLite consensus disorder prediction 280 299 - -
Cpe19g01052 634 PANTHER NUDIX HYDROLASE 22, CHLOROPLASTIC 381 627 - -
Cpe19g01052 634 MobiDBLite consensus disorder prediction 278 359 - -
Cpe19g01052 634 MobiDBLite consensus disorder prediction 69 100 - -
Cpe19g01052 634 ProSiteProfiles IQ motif profile. 108 136 IPR000048 GO:0005515
Cpe19g01052 634 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 426 605 - -
Cpe19g01052 634 ProSiteProfiles IQ motif profile. 130 159 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01052 - - - cmax:111497513 575.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00224 Cpe-Chr18:3887819 Cpe19g01052 Cpe-Chr19:7252482 1.34E-44 dispersed
Cpe19g01052 Cpe-Chr19:7252482 Cpe01g02257 Cpe-Chr1:19147453 7.84E-39 dispersed
Cpe14g00349 Cpe-Chr14:2130909 Cpe19g01052 Cpe-Chr19:7252482 5.91E-68 transposed
Cpe19g01052 Cpe-Chr19:7252482 Cpe20g00455 Cpe-Chr20:2629000 2.09E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g183 . . Bda02g00019 . . Bpe01g00879 . . . . . Cma07g00203 . Car07g00168 . . . Bhi03g00330 . . . . . . Cla01g02298 Cam01g2409 Cec04g2056 . Clacu01g2430 Cmu01g2294 Cre04g1962 Cone1ag0191 Cone5ag1677 . . Lsi01g00265 Csa06g03677 . Cme08g00247 . . . . . . . Bma11g01010 . . Cmo07g00202 . . . . Cpe19g01052 . . . . . . . . . . . . . . . . . Chy02g00253 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01224 CCT,CST,ECH 60 212 IQD Protein Family AT3G09710 53.9 7.4e-41 165.6
Cpe01g02257 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.9 2.2e-100 363.2
Cpe13g00819 CCT,CST,ECH 1 469 IQD Protein Family AT3G52290 52.0 6.7e-97 351.7
Cpe18g00224 . 1 349 IQD Protein Family AT3G22190 59.8 3.0e-89 326.2
Cpe02g00266 . 1 434 IQD Protein Family AT2G26180 59.5 3.4e-114 409.1
Cpe06g00243 . 1 438 IQD Protein Family AT2G26180 58.2 1.2e-111 400.6
Cpe19g01052 . 49 327 IQD Protein Family AT2G33990 51.6 4.1e-65 245.4
Cpe14g00349 . 98 281 IQD Protein Family AT2G33990 53.5 2.7e-48 189.5
Cpe19g01052 . 49 301 IQD Protein Family AT3G15050 50.2 1.1e-59 227.3
Cpe14g00349 . 101 274 IQD Protein Family AT3G15050 61.6 9.4e-54 207.6
Cpe08g00649 . 1 500 IQD Protein Family AT4G00820 56.3 1.3e-126 450.7
Cpe08g00649 . 1 500 IQD Protein Family AT1G01110 51.7 6.7e-123 438.3
Cpe04g01092 CST 1 382 IQD Protein Family AT3G16490 51.6 1.3e-67 254.2
Cpe17g00525 CCT,CST,ECH 201 454 IQD Protein Family AT3G16490 50.2 1.9e-50 197.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe19g01052 Cpe_Chr19 FPKM 4.825529 5.979199 1.202237 1.251106 11.501019 11.035862 11.865611 0.0 0.0 0.0