Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01052 ATGAGCACCGGATTGCCTTCATCTTTACTACTACGACTTCAGAAAGCTGGACCAGTTGTCTACTTCCTTCTCTTTCAAAATTGGAGTGCCTATGCTTATGCATTAGACCAGACATGGGATTTTGAAATTGGTTGTATAGTGAGCATGGGTTCTGGAGACTGGTTTAAGACTGTAATTCGCTTAAGGAAAGTAAAAACCAGCAGTTCAAAACATGCTAAGGAGAAATCACATGCTTTGAAATCGAATAATCTGGAAAAGGATTCCTCGAAGGTTAAAAAGAGTGGTACCAATGGGAGCAACAAGTCTCTTGGGATGCCAATTGAAGATGTAGCTGCAGTTCGGATTCAGACTGCATATCGAGCTTATCGTGCCAGGAAAATTTTACGTCGCTTGAAAGGAGCTGTGAGACTGCAGAATCTGACTCAAGGCCACTCTGTTAGAAGGCATGCTACATCTACAATAAGTTATCTTCATTCATGGAGCAATATACAGGCTCAAATTAGGGCTCGTCGAATCTGTATGGTGACTGAAGGACGCCTCAAACAAAAGAGATTGGAGAATCAACGAAAACTTGAGACTAAACTTCATGATATTGAGGTAGAGTGGTGTGGCGGTGCAGACACCATGGAGGAGATTCTTTCAAGGGTACACGAGAGAGAAGAAGCAGCTGTTAAGCGTGAACGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAGTGAGATGTATGGACTGGGTAAAGATGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATTGCTGCTCGTCCATGGGAGAGCCGCGTACCATCTAAGTTAGTTACTCCAAAGAAATCGACAATGAGACAATCAAGCAAAGCCAGTAAGAAAAGCTCTCCATCCCCAAAAGCAAGAGTTTTGGTTAAACCTCCTTCCCCGAATGGAAAATCAACTCCAAAGGCTCGAAGGTTGTCGTATCCAGCAACCGAAAAAACCGAGAAACTGGCTACAGAAGAAAAGGGCATCAAGAAAAGCGTTAAAGATGATGAAGCAAACACTAAGAAAGAAGAAACAACGCTATCGAAACCATCCCTCTACATTACACAGATCCCAAAACTCATGGAATCTTCGTCGGACTCTTCTGGGTGCTCAAGAAGGCTAGTCGCTTTGGCACAGCAACTCCGCCTTTACAAGCCGCCGCCATTGTTGGATGACATAGATGAGCCAAGCAGTGAGGAGAGCAATGGAAAGGTTGTTTCTCAAGTGGGTTTCCCGGAATCGGCCACCCCAATTTCCCGAGACCCAGAGAGATTCAGACCCAAGAAAGCGGCTGTGTTGATCTGCCTTTTTGAAGGGAAGGATGGCGATCTTCGGGTCATTCTCACCAAGCGATCCTCGAGGTTGTCTACTCACTCGGGTGAAATTGCATTGCCTGGAGGAAAAGCAGAGGAAGGAGATGAAGACGATGGGGCGACTGCGACGAGAGAAGCGGAGGAGGAAATTGGTTTGGATCCTTCGCTTGTAAATGTTGTTTCGGTTCTTGAGCCATTCTTGTCAAAGCATCTCCTAAGAGTGGTTCCTGTTATAGGCATTATGACTGACAGAAATGCATTCATTCCCAGACCAAATCCTGCTGAAGTGGAAGAAGTATTCGACGCTCCACTTGATATGTTCATTAAGGATGAAAATCGGAGATCAGAGGAAAGAGAGTGGATGGGATGCAAATACCTTGTTCATTTCTTTGACTATGAAACCGAGAACAAGAAGTATGTGATATGGGGTTTAACTGCTGGGATCTTGATAAGGGCTGCATCAATAGTACTCCAGAGTTCACCACCTTTTCTGGAGCAAAACCCTATCTTCAAGGTTCCAAGGGTTGTAGCCAAAGATACAATTATGTCTTAA 1905 44.72 MSTGLPSSLLLRLQKAGPVVYFLLFQNWSAYAYALDQTWDFEIGCIVSMGSGDWFKTVIRLRKVKTSSSKHAKEKSHALKSNNLEKDSSKVKKSGTNGSNKSLGMPIEDVAAVRIQTAYRAYRARKILRRLKGAVRLQNLTQGHSVRRHATSTISYLHSWSNIQAQIRARRICMVTEGRLKQKRLENQRKLETKLHDIEVEWCGGADTMEEILSRVHEREEAAVKRERAMAYAFSHQWRANSSEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSKLVTPKKSTMRQSSKASKKSSPSPKARVLVKPPSPNGKSTPKARRLSYPATEKTEKLATEEKGIKKSVKDDEANTKKEETTLSKPSLYITQIPKLMESSSDSSGCSRRLVALAQQLRLYKPPPLLDDIDEPSSEESNGKVVSQVGFPESATPISRDPERFRPKKAAVLICLFEGKDGDLRVILTKRSSRLSTHSGEIALPGGKAEEGDEDDGATATREAEEEIGLDPSLVNVVSVLEPFLSKHLLRVVPVIGIMTDRNAFIPRPNPAEVEEVFDAPLDMFIKDENRRSEEREWMGCKYLVHFFDYETENKKYVIWGLTAGILIRAASIVLQSSPPFLEQNPIFKVPRVVAKDTIMS 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7252482 7257858 + Cp4.1LG19g07090.1 Cpe19g01052 486460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01052 634 CDD CoAse 441 601 IPR045121 GO:0010945
Cpe19g01052 634 ProSiteProfiles Nudix hydrolase domain profile. 440 596 IPR000086 -
Cpe19g01052 634 SUPERFAMILY Nudix 439 600 IPR015797 -
Cpe19g01052 634 PANTHER NUDIX HYDROLASE 381 627 IPR045121 GO:0010945
Cpe19g01052 634 MobiDBLite consensus disorder prediction 471 498 - -
Cpe19g01052 634 MobiDBLite consensus disorder prediction 71 92 - -
Cpe19g01052 634 Pfam NUDIX domain 441 556 IPR000086 -
Cpe19g01052 634 MobiDBLite consensus disorder prediction 326 357 - -
Cpe19g01052 634 MobiDBLite consensus disorder prediction 280 299 - -
Cpe19g01052 634 PANTHER NUDIX HYDROLASE 22, CHLOROPLASTIC 381 627 - -
Cpe19g01052 634 MobiDBLite consensus disorder prediction 278 359 - -
Cpe19g01052 634 MobiDBLite consensus disorder prediction 69 100 - -
Cpe19g01052 634 ProSiteProfiles IQ motif profile. 108 136 IPR000048 GO:0005515
Cpe19g01052 634 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 426 605 - -
Cpe19g01052 634 ProSiteProfiles IQ motif profile. 130 159 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00224 Cpe-Chr18:3887819 Cpe19g01052 Cpe-Chr19:7252482 1.34E-44 dispersed
Cpe19g01052 Cpe-Chr19:7252482 Cpe01g02257 Cpe-Chr1:19147453 7.84E-39 dispersed
Cpe14g00349 Cpe-Chr14:2130909 Cpe19g01052 Cpe-Chr19:7252482 5.91E-68 transposed
Cpe19g01052 Cpe-Chr19:7252482 Cpe20g00455 Cpe-Chr20:2629000 2.09E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01052 - - cmax:111497513 575.089