Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01075 ATGTTGGGTGCAATGTCAGCCACTGTCGTTGATGGAAATGATCCAGTTACTGGTCACATAATATCCACAACTATAGGAGGCAAGAATGGGGAGCCCAAACAGACTATAAGTTACATGGCAGAACGTGTTGTTGGGACTGGATCATTTGGTATTGTTTTCAAGGCCAAATGCTTGGAAACTGGTGAAAACGTGGCTATAAAGAAGGTTTTGCAGGACAGAAGATATAAGAACCGTGAGCTACAGTTAATGCGTGTGATGGATCATTCAAATGTCATTTCCTTAAAGCATTGTTTCTTTTCCACTACTACAAAAGACGAACTTTTTCTCAACTTGGTTATGGAATATGTCCCTGAAACCATGTTTCGGGTTTTGAAGCATTACAGCAATGCAAATCAAAGAATGCCAATTATCTATGTCAAATTATACATGTACCAGGTTTTTAGGGGCCTGGCCTATATCCACACGGTTCATGGAGTTTGCCACCGAGATTTGAAGCCTCAAAATATTTTGGTGGATCCCCTTACTCACCAAGTTAAAATATGCGATTTTGGAAGTGCAAAAATGCTTATGAAAGGTGAAGCCAATGTTTCATACATATGTTCACGCTTCTATCGAGCCCCAGAACTCATATTTGGAGCTACAGAGTATACAACCTCAATAGATATTTGGTCTGCTGGTTGTGTCCTTGCAGAGCTACTTCTGGGACAGCCTTTGTTTCCCGGAGAAAATGCTGTGGACCAGCTTGTAGAGATTATTAAGGTTCTTGGCACGCCAACTCGTGAAGAAATTCGATGTATGAATCCAAGTTACACAGACTATAGGTTTCCACAGATAAAAGCTCACCCTTGGCACAAGGTTTTCCACAAACGAATGCCTCCTGAGGCAATAGATCTGGCTTCACGATTGCTTCAGTATTCACCTAGTCTCCGCTGTACTGCACTGGAAGCTTGCACACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTCCCAAATGGTCGACCATTCCCACCCCTCTTTAATTTCAAACAAGAGCTGTTGGGGGCCTCTCCAGAGCTCGTTAACAGATTGATACCTGATCAAGTGAAACGACAAATGGGTCTTAATTTGAATCTAGCCGTGTCGGGAAGGGATAATTTCAGCCATTCAATTACCCGCATCTCGAGGTTTCCTGGTCTTTCGCCCTCTTATTTTGTGTTGACAATCTTGGCAATGGAAGTTGCAAAGCTAAAGATGGTTCTGTTGCTATTCGCCTTCATCTGGCTGGTTTCTGCTTCAGACAGTCATTTGTCTCCCAAAGGAGTAAACTATGAAGTGGCGGCTTTGATGTCAATGAAGAGTAGGATAAGGGACGAGCGGAGAGTGATGGAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGTTTATGGTTGCTTGCTCTACCGAGGGCTTTGTGGTTTCTCTTGAGATGCCAAATATGGGCTTATCTGGAACGCTTTCCCCTAGCATTGGGAACCTGAGTCACCTTCGGACAATGTTGTTGCAAAATAATGAGTTAACTGGTCCAATCCCAGATGACATAGGAGGACTTACAGAGCTTCAGACTCTTGACCTTTCCCACAACCAGATTGTCGGAGGCATTCCAAGTTCTTTGGGGTTTCTTACTCATTTGAATTACTTGAAGCTTAGTGGTAACAAGTTAAGTGGACCAATTCCGGAATCTGTTGCAAATATCTCAGGGATTTATCAAATAATAATCTCAGTGGCCCAACTCCAAGAATACTTTCCAAAGAGTACAGGGAATAGATTCCTTTGTGCATCTTCAGAATCTAAAGTGTGTGGAGGAGTATCAAAACCAGTTAATGAAACTGGTTCGCCTCAGAAGGATAATAGCCATCATCACTTGGTTCTTTCCATAGCTCTATTTGTCAGTTTCACGCTGGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCAAATCCAACGTGCAGCAAGATTATGAATTTGATATAGGCCATCTGAAAAGGTTTACATTCCGTGAATTACAAAAGGCAACATGTAATTTTAGTCCCCAGAATATCGTGGGACAGGGTGGTTTTGGTGTAGTTTATAAAGGGTATCTTCCAAATGGGACATATGTTGCAGTCAAGAGACTGAAAGATCCAAATTATACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAACCTCTTGCGTTTGTATGGCTTTTGTATGACGCCACATGAAAGGCTGCTTGTTTATCCATATATGCCAAATGGGAGTGTCGCTGACCGCCTCAGAGATGCAAGCCAAGAGAAACCATCGTTGAATTGGAACAGAAGACTGCGTATTGCCCTTGGTGCAGCACGTGGACTAGTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTAAAAGCTGCAAACATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTTGGGGATTTTGGTCTGGCAAAGATGTTGGATAGAAGGGACTCACATGTTACTACAGCAGTTAGGGGCACAGTGGGGCATATCGCCCCCGAATACCTTTCAACTGGACAATCTTCAGAAAAGAGTGATGTTTTTGGGTTTGGCATATTGGTTCTGGAACTCTTAACAGGGCCAAAAGCAGTAGATGCTGGCAACGGTCAGGTGGTTCGAAAAGGAACGATTCTCGAATGGGTTAGAACGTTACATGAGGAGAAGAGGCTAGATGAGATGGTGGACAGGGATCTAAGAGGGTGTTTTGATGCAATGGAGCTGGACAAAGCTGTAGAATTGGCTCTGCAGTGTACTCAGTCGCATCCACAACTCAGACCAAGGATGTCCGAGATTCTTAAGGTTTTAGAAGGTCTTGTTGGAGAGTTGAGCCAAATCGAGGAATCACCAGGCGGAGCAGCAAGTCTTTATGAGGACAGAGCTCATAGTTTCTCCCGGAATTACAGTGATATTCATGAAGAGTCTTCATTCGTTGTGGAAGCCATGGAGCTGTCGGGACCTCGATGA 3060 43.56 MLGAMSATVVDGNDPVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFKAKCLETGENVAIKKVLQDRRYKNRELQLMRVMDHSNVISLKHCFFSTTTKDELFLNLVMEYVPETMFRVLKHYSNANQRMPIIYVKLYMYQVFRGLAYIHTVHGVCHRDLKPQNILVDPLTHQVKICDFGSAKMLMKGEANVSYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKVLGTPTREEIRCMNPSYTDYRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACTHPFFDELREPNARLPNGRPFPPLFNFKQELLGASPELVNRLIPDQVKRQMGLNLNLAVSGRDNFSHSITRISRFPGLSPSYFVLTILAMEVAKLKMVLLLFAFIWLVSASDSHLSPKGVNYEVAALMSMKSRIRDERRVMEGWDINSVDPCTWFMVACSTEGFVVSLEMPNMGLSGTLSPSIGNLSHLRTMLLQNNELTGPIPDDIGGLTELQTLDLSHNQIVGGIPSSLGFLTHLNYLKLSGNKLSGPIPESVANISGIYQIIISVAQLQEYFPKSTGNRFLCASSESKVCGGVSKPVNETGSPQKDNSHHHLVLSIALFVSFTLVVSVVLLVGWVHCYRSHLVFKSNVQQDYEFDIGHLKRFTFRELQKATCNFSPQNIVGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPHERLLVYPYMPNGSVADRLRDASQEKPSLNWNRRLRIALGAARGLVYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKSDVFGFGILVLELLTGPKAVDAGNGQVVRKGTILEWVRTLHEEKRLDEMVDRDLRGCFDAMELDKAVELALQCTQSHPQLRPRMSEILKVLEGLVGELSQIEESPGGAASLYEDRAHSFSRNYSDIHEESSFVVEAMELSGPR 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7333938 7342980 + Cp4.1LG19g06870.1 Cpe19g01075 486483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01075 1019 CDD STKc_GSK3 33 325 IPR039192 -
Cpe19g01075 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cpe19g01075 1019 Gene3D Transferase(Phosphotransferase) domain 1 770 976 - -
Cpe19g01075 1019 ProSiteProfiles Protein kinase domain profile. 694 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g01075 1019 Gene3D Phosphorylase Kinase; domain 1 23 117 - -
Cpe19g01075 1019 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524
Cpe19g01075 1019 Pfam Protein kinase domain 38 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g01075 1019 Pfam Protein kinase domain 697 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g01075 1019 Gene3D Phosphorylase Kinase; domain 1 663 769 - -
Cpe19g01075 1019 Gene3D Transferase(Phosphotransferase) domain 1 118 365 - -
Cpe19g01075 1019 ProSiteProfiles Protein kinase domain profile. 38 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g01075 1019 Pfam Leucine rich repeat 501 540 IPR001611 GO:0005515
Cpe19g01075 1019 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 414 1019 - -
Cpe19g01075 1019 SUPERFAMILY L domain-like 439 598 - -
Cpe19g01075 1019 SUPERFAMILY Protein kinase-like (PK-like) 37 346 IPR011009 -
Cpe19g01075 1019 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 37 248 - -
Cpe19g01075 1019 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 414 1019 - -
Cpe19g01075 1019 ProSitePatterns Protein kinases ATP-binding region signature. 700 722 IPR017441 GO:0005524
Cpe19g01075 1019 SMART serkin_6 38 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g01075 1019 SMART serkin_6 694 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe19g01075 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Cpe19g01075 1019 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 37 248 - -
Cpe19g01075 1019 Gene3D Ribonuclease Inhibitor 437 612 IPR032675 -
Cpe19g01075 1019 Pfam Leucine rich repeat N-terminal domain 438 477 IPR013210 -
Cpe19g01075 1019 SUPERFAMILY Protein kinase-like (PK-like) 676 968 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01509 Cpe-Chr5:10392369 Cpe19g01075 Cpe-Chr19:7333938 3.29E-11 dispersed
Cpe09g00254 Cpe-Chr9:1462093 Cpe19g01075 Cpe-Chr19:7333938 2.08E-07 dispersed
Cpe13g01002 Cpe-Chr13:8267740 Cpe19g01075 Cpe-Chr19:7333938 2.43E-24 dispersed
Cpe14g00602 Cpe-Chr14:3825757 Cpe19g01075 Cpe-Chr19:7333938 7.30E-08 dispersed
Cpe16g00770 Cpe-Chr16:7646642 Cpe19g01075 Cpe-Chr19:7333938 2.82E-10 dispersed
Cpe16g00828 Cpe-Chr16:7973940 Cpe19g01075 Cpe-Chr19:7333938 3.27E-32 dispersed
Cpe17g00349 Cpe-Chr17:2458278 Cpe19g01075 Cpe-Chr19:7333938 3.40E-06 dispersed
Cpe18g00604 Cpe-Chr18:6386088 Cpe19g01075 Cpe-Chr19:7333938 2.03E-70 transposed
Cpe10g00138 Cpe-Chr10:873422 Cpe19g01075 Cpe-Chr19:7333938 0 wgd
Cpe15g00827 Cpe-Chr15:8199278 Cpe19g01075 Cpe-Chr19:7333938 5.03E-10 wgd
Cpe19g01075 Cpe-Chr19:7333938 Cpe04g00796 Cpe-Chr4:7548686 8.45E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63061 PF00069 Pkinase 5.40E-65 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01075 - - mnt:21389269 1540.78