Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01089 ATGGCTGAGATTTCAGGACCCAGCAATGGACACCACAGTGTTCCTCTGAACATCAAAGATGAACCCACACCCCTCACTGCCACAGAACCACTCGACTGTATCTCTGTTCCTTTCATTCAAAAGTTGATTGCGGAAGTTTTAGGGACATATTTCTTGATATTTGCTGGTGGTGCATCAGTGGTTGTGAATTTGAGCAAAGACAAAGTCGTCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGGTCTATTCTGTCGGCCACATCTCTGGTGCTCATTTTAACCCTGCTGTCACCATAGCCTTCGCCACCACCAAGAGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAATTCTTGGATCAACATTGGCAAGTGGGACACTTAGGCTAATCTTTAATGGAGAAGAAGACCACTTTTCAGGGACTCTCCCAAGTGACTCATATTTGCAGACCTTTGTCATTGAATTCATCATCACATTTTACCTTATGTTTGTGGTCTCTGGCGTTGCCACTGACAATAGAGCCATTGGTGAACTTGCTGGACTTGCCGTCGGCGCCACAGTGCTTCTCAACGTCATGTTTGCAGGGCCAATTACAGGAGCGTCCATGAATCCAGCCAGAAGCTTGGGGCCTGCAATAGTGTCAAGGCAGTTCAAAGGGTTGTGGATATACATCGTCGCTCCCATTTTGGGGGCAATTTCAGGTGCTTTGGTCTACAACACCATCAGGTTCACAGACAAACCTTTACGAGAAATCACCAAAAGTGCTTCTTTTCTCAGAGGACAAAGTCGTAGTGGCTCGCATTGA 828 46.14 MAEISGPSNGHHSVPLNIKDEPTPLTATEPLDCISVPFIQKLIAEVLGTYFLIFAGGASVVVNLSKDKVVTFPGISIVWGLVVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQILGSTLASGTLRLIFNGEEDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFAGPITGASMNPARSLGPAIVSRQFKGLWIYIVAPILGAISGALVYNTIRFTDKPLREITKSASFLRGQSRSGSH 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7398581 7400600 + Cp4.1LG19g06570.1 Cpe19g01089 486497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01089 275 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g01089 275 SUPERFAMILY Aquaporin-like 34 260 IPR023271 -
Cpe19g01089 275 TIGRFAM MIP: MIP family channel proteins 44 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g01089 275 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g01089 275 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g01089 275 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g01089 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g01089 275 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g01089 275 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g01089 275 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Cpe19g01089 275 Pfam Major intrinsic protein 35 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe19g01089 275 Gene3D Glycerol uptake facilitator protein. 30 261 IPR023271 -
Cpe19g01089 275 PANTHER AQUAPORIN NIP2-1 3 268 IPR034294 -
Cpe19g01089 275 PANTHER AQUAPORIN NIP1-1-RELATED 3 268 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00126 Cpe19g01089 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00559 Cpe-Chr1:3240447 Cpe19g01089 Cpe-Chr19:7398581 9.79E-63 dispersed
Cpe03g00510 Cpe-Chr3:3002717 Cpe19g01089 Cpe-Chr19:7398581 3.32E-76 dispersed
Cpe04g00059 Cpe-Chr4:579274 Cpe19g01089 Cpe-Chr19:7398581 1.44E-64 dispersed
Cpe04g00060 Cpe-Chr4:601946 Cpe19g01089 Cpe-Chr19:7398581 7.26E-40 dispersed
Cpe19g01089 Cpe-Chr19:7398581 Cpe19g01091 Cpe-Chr19:7401374 1.12E-154 proximal
Cpe03g01417 Cpe-Chr3:11397865 Cpe19g01089 Cpe-Chr19:7398581 2.12E-43 transposed
Cpe02g01458 Cpe-Chr2:12568479 Cpe19g01089 Cpe-Chr19:7398581 9.83E-32 transposed
Cpe10g00126 Cpe-Chr10:808572 Cpe19g01089 Cpe-Chr19:7398581 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01089 K09874 - csv:101219297 473.781