Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01096 ATGTCTGATTCACCTCAGAAGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAACCGTCAAGTCACTTTCTGTAAGAGACGAAATGGACTTCTCAAAAAGGCTTATGAGCTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAACCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGACAACAATTGATAGATACAAAAAGGCATCTTCAAATTCTCCGAACACCGGATCTACTTCTGAAACTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTGCGTGTTCAGATTGGTAATTTGCAGAACTCAAACAGGAACATGCTTGGTGATTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGTCTTGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGATCCAAAAAGAATGAACTCCTCTTTGCTGAAATCGAGTACATGCGCAAAAGGGAGTTTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGGGGAGGAGAATTTGAGCTGATGCAATCTCATCCCTACGATCCAAGAGACTTCTTCCAAGTCAACGGCTTACAACACAATCAACAGTATCCACGTCAAGACAACATGTCTCTCCAGTTAGTATAA 693 40.69 MSDSPQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKTTIDRYKKASSNSPNTGSTSETNTQFYQQEAAKLRVQIGNLQNSNRNMLGDSLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKREFDLHNNNQLLRAKIAESERNVNMMGGGEFELMQSHPYDPRDFFQVNGLQHNQQYPRQDNMSLQLV 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7418452 7423244 + Cp4.1LG19g06490.1 Cpe19g01096 486504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01096 230 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Cpe19g01096 230 Gene3D - 21 104 IPR036879 GO:0003677|GO:0046983
Cpe19g01096 230 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe19g01096 230 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Cpe19g01096 230 PANTHER AGAMOUSB 6 224 - -
Cpe19g01096 230 SUPERFAMILY SRF-like 10 87 IPR036879 GO:0003677|GO:0046983
Cpe19g01096 230 CDD MADS_MEF2_like 10 84 IPR033896 GO:0000977|GO:0045944
Cpe19g01096 230 PANTHER MADS BOX PROTEIN 6 224 - -
Cpe19g01096 230 Pfam K-box region 91 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe19g01096 230 Coils Coil 132 152 - -
Cpe19g01096 230 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Cpe19g01096 230 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Cpe19g01096 230 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Cpe19g01096 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Cpe19g01096 230 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00122 Cpe19g01096 CCT
Cpe19g01096 Cpe20g00485 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe16g00732 Cpe-Chr16:7416046 Cpe19g01096 Cpe-Chr19:7418452 2.18E-66 dispersed
Cpe17g00324 Cpe-Chr17:2200090 Cpe19g01096 Cpe-Chr19:7418452 3.07E-46 dispersed
Cpe19g01096 Cpe-Chr19:7418452 Cpe17g01070 Cpe-Chr17:8101437 1.77E-49 dispersed
Cpe10g00122 Cpe-Chr10:785283 Cpe19g01096 Cpe-Chr19:7418452 9.94E-163 wgd
Cpe19g01096 Cpe-Chr19:7418452 Cpe20g00485 Cpe-Chr20:2812620 5.33E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51063 PF01486 K-box 2.60E-28 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01096 K09264 - csv:101221430 399.053