Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe19g01096 | ATGTCTGATTCACCTCAGAAGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAACCGTCAAGTCACTTTCTGTAAGAGACGAAATGGACTTCTCAAAAAGGCTTATGAGCTTTCTGTTCTGTGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAACCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGACAACAATTGATAGATACAAAAAGGCATCTTCAAATTCTCCGAACACCGGATCTACTTCTGAAACTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTGCGTGTTCAGATTGGTAATTTGCAGAACTCAAACAGGAACATGCTTGGTGATTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGTCTTGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGATCCAAAAAGAATGAACTCCTCTTTGCTGAAATCGAGTACATGCGCAAAAGGGAGTTTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGGGGAGGAGAATTTGAGCTGATGCAATCTCATCCCTACGATCCAAGAGACTTCTTCCAAGTCAACGGCTTACAACACAATCAACAGTATCCACGTCAAGACAACATGTCTCTCCAGTTAGTATAA | 693 | 40.69 | MSDSPQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKTTIDRYKKASSNSPNTGSTSETNTQFYQQEAAKLRVQIGNLQNSNRNMLGDSLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKREFDLHNNNQLLRAKIAESERNVNMMGGGEFELMQSHPYDPRDFFQVNGLQHNQQYPRQDNMSLQLV | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 7418452 | 7423244 | + | Cp4.1LG19g06490.1 | Cpe19g01096 | 486504 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe19g01096 | 230 | ProSitePatterns | MADS-box domain signature. | 11 | 65 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe19g01096 | 230 | Gene3D | - | 21 | 104 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe19g01096 | 230 | ProSiteProfiles | K-box domain profile. | 95 | 185 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe19g01096 | 230 | ProSiteProfiles | MADS-box domain profile. | 9 | 69 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe19g01096 | 230 | PANTHER | AGAMOUSB | 6 | 224 | - | - | |
Cpe19g01096 | 230 | SUPERFAMILY | SRF-like | 10 | 87 | IPR036879 | GO:0003677|GO:0046983 | |
Cpe19g01096 | 230 | CDD | MADS_MEF2_like | 10 | 84 | IPR033896 | GO:0000977|GO:0045944 | |
Cpe19g01096 | 230 | PANTHER | MADS BOX PROTEIN | 6 | 224 | - | - | |
Cpe19g01096 | 230 | Pfam | K-box region | 91 | 179 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cpe19g01096 | 230 | Coils | Coil | 132 | 152 | - | - | |
Cpe19g01096 | 230 | PRINTS | MADS domain signature | 11 | 31 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe19g01096 | 230 | PRINTS | MADS domain signature | 31 | 46 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe19g01096 | 230 | PRINTS | MADS domain signature | 46 | 67 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe19g01096 | 230 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 18 | 65 | IPR002100 | GO:0003677|GO:0046983 | |
Cpe19g01096 | 230 | SMART | madsneu2 | 9 | 68 | IPR002100 | GO:0003677|GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe10g00122 | Cpe19g01096 | CCT | |
Cpe19g01096 | Cpe20g00485 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe16g00732 | Cpe-Chr16:7416046 | Cpe19g01096 | Cpe-Chr19:7418452 | 2.18E-66 | dispersed | |
Cpe17g00324 | Cpe-Chr17:2200090 | Cpe19g01096 | Cpe-Chr19:7418452 | 3.07E-46 | dispersed | |
Cpe19g01096 | Cpe-Chr19:7418452 | Cpe17g01070 | Cpe-Chr17:8101437 | 1.77E-49 | dispersed | |
Cpe10g00122 | Cpe-Chr10:785283 | Cpe19g01096 | Cpe-Chr19:7418452 | 9.94E-163 | wgd | |
Cpe19g01096 | Cpe-Chr19:7418452 | Cpe20g00485 | Cpe-Chr20:2812620 | 5.33E-78 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51063 | PF01486 | K-box | 2.60E-28 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe19g01096 | K09264 | - | csv:101221430 | 399.053 |