Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe19g01129 | ATTGGATGGGCCCGTGGGGGAGATTTCCCGCCTGAAGTAAACAATTTTCGCGCCAAATCGACACCCCTTATTGTCAGTGGCCAATCGGAAGTCATACGGTCTCTCAATTCATTGTTTTTTTATTTCCTCGCTATCTATCTCCGCCGGTACGTCGACGAAGAAGCGAAGGAGGGGAAAGTCAGGGCCAAGGAAATGGACGTGGGTGAAGAAATTAGGGCAGCTCACAAGAGAGACTTTTTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAATCCATGATTAATCATAAGCGACATCGCCTTATAATCAACATTTCCGATCTTCACTCTTTCAGAGATCTTGGTCCCAGGGTGCTCAGGAATCCCGGCGAGTACATTCAGCCATTCTGCGATGCAGTCACAGAAACTGCTCGCAGTATTGATCCAAAATATCTCAAGGAGGGAGAGCAAGTTTTGGTGGGTTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCTAGGGAACTTCTCTCTCAGTTCATTGGCTCCATGGTCTGCGTCGAGGGCATTGTCACCAAATGTTCCCTTGTCAGACCAAAAGTTGTCAAAAGTGTTCATTTCTGCCCCACAACCGGTGGTTTTACCAGCCGTGAATACCGTGACATTGCATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGAAAATGGCAACTTGTTGGTTACCGAGTATGGCTTGTGTAGATACAAAGATCATCAGACTTTATCAATGCAAGAAATGCCTGAGAATTCAGCGCCTGGTCAGCTTCCACGAACAGTGGATGTCATAGTCGAGGATGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCAATTGTAGGAATATATAAAGCTCTTCCAGGAAAAAGTAAGGGCAGCGTGAATGGAGTGTTCAGGACTGTTCTTGTAGCTAACAATGTTTCTCTGCTAAACAAAGAGGCAAATGCACCCATATACAGTCCCGAGGACTTGAAGAATATTAAAAAGATAGCTGAAAGAGATGACACATTTGACCTTCTCGGTAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCAGTGATACTATTGATGCTTGGTGGAGTGGAGAAGAACTTGAAGAACGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTCGCCAAGTCTCAACTTTTAAGGGCGATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGCGTTGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAAAGAAGGCTTGAAGCTGGTGCAATGGTTCTTGCTGATAGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAACGCTCGGTGCAGTGTAGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGCTCATTGACACCAACAAAGAATATAGGTCTTCCAGACTCCCTACTCTCTCGATTTGATCTATTGTTTATTGTACTGGATCAAATGGATCCTGATATTGATCGCCATATTTCGGAACATGTGTTACGTATGCACCGGTATCGTTCTGTACTTGATGGAGGAGAGGCTGGGGGCTCGATGTATGGAAGAGAAGATGAAGCTGAGGCTGACACTTCTGTCTTCGTCAAGTATAATAGAATGCTTCATGGAAAGAAGACAGAACGTGGTCGGAAGCGTGATACTCTCACCATCAAGTTTCTCAAGAAGTATATTCATTATGCTAAGCATAGGATACAACCCGACCTAACTGATGAGACTGGAGGAACTCTTCCAATGACTGCCAGAACCTTAGAAACCATTATACGTCTCTCAACTGCTCATGCAAAATTGAAGTTGAGTAGAAAGGTTTCAAAGTCTGATGTTGAAGCTGCCTTGAAAGTTCTTAATTTTGCCATATATCATAAAGAGTTGACTGAAATGGAAGAGCGTGAGCAAGAAAGGGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAGCATCAAACAGTGGAAAATGATGAACCAGAACGAAGTACCAAAAGAAGAGAGGAGAGCTCAAGGACAGACACCATGGAAATCGATGATCCTCTTACCGAACCTGTACTCGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTATTTGGTCAGCACATGCGTGCAAACCACCTGGATCTTATATCTATTGCCGACATTGAGAATATCGTTAATTCTGCAGCAGATACTCGTTACTCTACAGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGATAGCGTGGAACTTAACACAGCGATGGCCTTTCCTTTTCTTTCCAACGCCATCACCTCCTCCTTCTCCCAATTGAACTCTCAACGTCTCCATTTTTGTCCTCTCTGTCTCTGCAAATCCTCTCTCCCCGTTTCCTTCTCTTCCAAGAAATTCGCCTCCTTCTCCATTCTCAACTCCACCAAGATGGAAGGAAATCAAATTACGGAAGAAGTTGCAGAGAAACAAAACGATGCAAGGAGAAAGATCTTTGTGGCCGGTGCATCGGGAAGTACTGGAAAAAGGATTGTGGAGCAGTTGCTGGCGAGGGGTTTTGCAGTCAAAGCCGGAGTTCGAGACGTGAGCAAGGCTAAAGCTACTCTTTCCACAGACAATCCTGCTCTTCAAATCGTGAAAGCGGATGTGACTGAAGGCTCTGCAAAGTTGGCAGAAGCCATAGGTTCCGATTCTGAAGCAGTAATTTGTGCTACAGGCTTTCGCCCAGGCTGGGATTTATTTGCGCCATGGAAGATCGACAATTTTGGCACTGTAAACCTTGTTGAAGCATGCCGTGAGTTGGGCATAAACAGATTTGTTCTCATCAGTTCCATTTTAGTGAATGGAGCTGCAATGGGGCAGATTCTCAACCCAGCTTATATCTTTCTAAATGTTTTCGGGCTCACCTTGATAGCAAAGCTTCAAGCAGAACGCCACATCAGGAAATCGGGTATTGACTACACGATAATAAGGCCTGGAGGTTTGAAAAATGAGCCTCCCACTGGAAATTTAGTCATGGCAGCAGAAGATACTCTTTATGAAGGAAGCATATCAAGAGACTTAGTTGCAGAAGTAGCTGTTGAGGCATTGGTTCGCCCCGAAGCGTCTTACAAGGTTGTCGAAATAGTTTCTCGTGCTGATGCGCCGAAGCTTTCATATGAGGATCTTTTTGGCTCCATAAAGCAGCCTTCCGCAGAAAATACCTAA | 3387 | 44.55 | IGWARGGDFPPEVNNFRAKSTPLIVSGQSEVIRSLNSLFFYFLAIYLRRYVDEEAKEGKVRAKEMDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKSMINHKRHRLIINISDLHSFRDLGPRVLRNPGEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDIASNMGLPTGSVYPTRDENGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDVIVEDDLVDCCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSMYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDETGGTLPMTARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKELERKRRAEHQTVENDEPERSTKRREESSRTDTMEIDDPLTEPVLDLSAERIEAFNSLFGQHMRANHLDLISIADIENIVNSAADTRYSTAEIMLLLQRLQDDNRVMIADSVELNTAMAFPFLSNAITSSFSQLNSQRLHFCPLCLCKSSLPVSFSSKKFASFSILNSTKMEGNQITEEVAEKQNDARRKIFVAGASGSTGKRIVEQLLARGFAVKAGVRDVSKAKATLSTDNPALQIVKADVTEGSAKLAEAIGSDSEAVICATGFRPGWDLFAPWKIDNFGTVNLVEACRELGINRFVLISSILVNGAAMGQILNPAYIFLNVFGLTLIAKLQAERHIRKSGIDYTIIRPGGLKNEPPTGNLVMAAEDTLYEGSISRDLVAEVAVEALVRPEASYKVVEIVSRADAPKLSYEDLFGSIKQPSAENT | 1128 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 7595726 | 7605033 | + | Cp4.1LG19g06170.1 | Cpe19g01129 | 486537 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe19g01129 | 1128 | Gene3D | - | 335 | 705 | IPR027417 | - | |
| Cpe19g01129 | 1128 | SMART | mcm | 168 | 684 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01129 | 1128 | CDD | MCM3 | 356 | 682 | - | - | |
| Cpe19g01129 | 1128 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 889 | 1104 | IPR036291 | - | |
| Cpe19g01129 | 1128 | Pfam | MCM OB domain | 173 | 303 | IPR033762 | - | |
| Cpe19g01129 | 1128 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 363 | 696 | IPR027417 | - | |
| Cpe19g01129 | 1128 | PANTHER | DNA HELICASE | 67 | 637 | - | - | |
| Cpe19g01129 | 1128 | Gene3D | - | 199 | 253 | - | - | |
| Cpe19g01129 | 1128 | Pfam | NAD(P)H-binding | 895 | 1092 | IPR016040 | - | |
| Cpe19g01129 | 1128 | Pfam | MCM N-terminal domain | 76 | 147 | IPR027925 | - | |
| Cpe19g01129 | 1128 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 636 | 810 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01129 | 1128 | SUPERFAMILY | Nucleic acid-binding proteins | 77 | 322 | IPR012340 | - | |
| Cpe19g01129 | 1128 | SMART | AAA_5 | 395 | 548 | IPR003593 | - | |
| Cpe19g01129 | 1128 | PANTHER | DNA HELICASE | 636 | 810 | - | - | |
| Cpe19g01129 | 1128 | Coils | Coil | 685 | 711 | - | - | |
| Cpe19g01129 | 1128 | Pfam | MCM P-loop domain | 341 | 563 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01129 | 1128 | CDD | SDR_a5 | 890 | 1105 | - | - | |
| Cpe19g01129 | 1128 | Pfam | MCM AAA-lid domain | 639 | 680 | IPR041562 | - | |
| Cpe19g01129 | 1128 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 482 | 495 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01129 | 1128 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 533 | 541 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01129 | 1128 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 506 | 518 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01129 | 1128 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 394 | 409 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01129 | 1128 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 454 | 468 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01129 | 1128 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 67 | 637 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01129 | 1128 | ProSiteProfiles | MCM family domain profile. | 353 | 559 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01129 | 1128 | Gene3D | - | 173 | 303 | IPR012340 | - | |
| Cpe19g01129 | 1128 | Gene3D | - | 68 | 163 | - | - | |
| Cpe19g01129 | 1128 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 555 | 565 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Cpe19g01129 | 1128 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 245 | 259 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Cpe19g01129 | 1128 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 271 | 283 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Cpe19g01129 | 1128 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 522 | 532 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Cpe19g01129 | 1128 | Gene3D | - | 871 | 1110 | - | - | |
| Cpe19g01129 | 1128 | MobiDBLite | consensus disorder prediction | 691 | 737 | - | - | |
| Cpe19g01129 | 1128 | ProSitePatterns | MCM family signature. | 462 | 470 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe10g00097 | Cpe19g01129 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe19g00345 | Cpe-Chr19:3023022 | Cpe19g01129 | Cpe-Chr19:7595726 | 2.06E-08 | dispersed | |
| Cpe19g01129 | Cpe-Chr19:7595726 | Cpe19g01218 | Cpe-Chr19:8191358 | 3.37E-89 | dispersed | |
| Cpe05g00941 | Cpe-Chr5:6163518 | Cpe19g01129 | Cpe-Chr19:7595726 | 3.65E-09 | transposed | |
| Cpe15g00520 | Cpe-Chr15:6117007 | Cpe19g01129 | Cpe-Chr19:7595726 | 8.38E-19 | transposed | |
| Cpe10g00097 | Cpe-Chr10:655919 | Cpe19g01129 | Cpe-Chr19:7595726 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe19g01129 | K02541 | - | csv:101210889 | 1369.76 |