Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01157 ATGAAGTCGGTGATTGAAGAGATTGACTTTGGTGCTTCAAATTTGGGGGTCAATACTTCATTGGGTTTGTTGGATCTCACTGAAATGAGGCTTTCAGCTGCTGGTTTCAGCCCTCAGCCTCCGGAAGGGGAGAAGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTATCTCTACCTGCTGTTGGAAGTCGGGCTGTTTACTTTCCACAGGGTCACAGCGAGCAGGTAGCCATATCGACCAACAAAGAAGTGGATGCCCATATACCAAGTTATCCAAGCTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTTACCATGCATGCAGATATCGAGACGGACGAAGTTTATGCTCAGATGACCTTGCAACCGCTCAGTGCTCAAGAGCAAAAGGAGCCATATCTTCCAGCTGAGTTGGGTGCTCCAAGCAAACAACCGACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACAAGTACGCATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAAAAAGTTTTTCCTCCATTGGTAATCCTAAAAATGAATGAAAAGAATCAATTACTATTGGGGATCCGTCGAGCTAGCCGACCACAAACGATGATGCCCTCATCGGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCCAGAGCTAGCCCATCAGAGTTCATCATTCCTCTGGCTAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCTGTCGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCAAGTGTTCGTCGATACATGGGCACTATTACTGGCATCAGTGACTTAGATCCTGCTCGATGGCCAAACTCACACTGGCGCTCCGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCGTTATGGGAGATCGAGCCACTAACAACCTTCCCGATGTATCCGTCTCCGTTTTCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTGCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAACTCACAACTAATGTGGCTACGGGGAGACGCTCTAGATCGTGGAATTCAACCTCTGAACCTCCATGGAATCGGAGTTGCACCATGGATGCAGCCGAGGCTCGATGCTTCCATGGTGGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACCGTTGATCCTGCTAAGGCGCAGGCCGCATCGCTTCTTCAGTTCCAACAAACCCAAAATCTTCCCAACAGGCCTGCTACTTTCATGTCACCTCAGATGTTGCAGCAGCCTCAGCCTCACCAGACCTTTATCCAAAATGATCATGAAATCCAACATCTCCCTCATTCTCAGGCCCCAACCCAGCCTACCGTTCTTCGGCAGGAGATGAAGCATCAGACATTCAACAACGAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCCACAACAGCAAGTGTTTGATCACCAACAAATTTCGAGTAGCATCTCTACAATGACACAGTTCGGTTCGGTATCCCAATCCCTGCAAACTATTCCTTCATTTTGCAGGCAGCAGAGTTTTTCTGATTCAAATGGCATCCATATGACAAATCCTATCATTTCACCATTGCACAGCCTGTTAGGTTCGTTTCCGCAAGATGAATCGTCTCAGCTGCTTAATCTGCCTAGAACACATCCCATGATACATTCATCTACGTGGCCATCAAAGCGAGCTGCAATCGATCCTCATATCTCTTCTGGAAATTCTCAGTTTGTTCATCTCCAAGAGGAAAATATGGGGACAGCTCAGGCTAATATCTCTCAGAATGTTTCTTTGCCGCCGTTTCCTGGTAGAGAGTGTTCATTAGATCAAAGGAATGGTGACCCGCAGAGTAATCTTCTATTTGGTGTCAATATAGAGCCTTCATCTCTTCTAATGCAGAATGGTATGCCAAATATTAGGGGAATTTGCAGTGACAGTGACTCAACAGCGATACCGTTTTCGTCCAATTATGTGAATACTGCTGGTACCAACTTCTCTGCCAATCCAGCTGGGACACCTTCCAATTGCATTGAGGATTCGGGTATCTTGCCGAACTTCGTAAAGGTTTACAAGTCGGGGACCTTCGGTAGATCACTGGATATTTCGAAATTCAGTAGCTACCATCAGTTACGTAGTGAGCTCGCTCACAAGTTCAATCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCAGGAGTTTGTCAACAGTGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAGGGTTGATAGCTATGCCGATAGACAGGAGTCGTCCAGAAATTTGAGTAGCGGGATAACTTCTGTCGGGTCGCTCGAGTACTGA 2523 47.4 MKSVIEEIDFGASNLGVNTSLGLLDLTEMRLSAAGFSPQPPEGEKRVLNSELWHACAGPLVSLPAVGSRAVYFPQGHSEQVAISTNKEVDAHIPSYPSLPPQLICQLHNVTMHADIETDEVYAQMTLQPLSAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLVILKMNEKNQLLLGIRRASRPQTMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFSLRLKRPWPTGLPSFHGLKEDDLGLNSQLMWLRGDALDRGIQPLNLHGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQTQNLPNRPATFMSPQMLQQPQPHQTFIQNDHEIQHLPHSQAPTQPTVLRQEMKHQTFNNEQQQQQQQQQQPQQQVFDHQQISSSISTMTQFGSVSQSLQTIPSFCRQQSFSDSNGIHMTNPIISPLHSLLGSFPQDESSQLLNLPRTHPMIHSSTWPSKRAAIDPHISSGNSQFVHLQEENMGTAQANISQNVSLPPFPGRECSLDQRNGDPQSNLLFGVNIEPSSLLMQNGMPNIRGICSDSDSTAIPFSSNYVNTAGTNFSANPAGTPSNCIEDSGILPNFVKVYKSGTFGRSLDISKFSSYHQLRSELAHKFNLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWQEFVNSVWCIKILSPQEVQEMGRVDSYADRQESSRNLSSGITSVGSLEY 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7752738 7757835 - Cp4.1LG19g05880.1 Cpe19g01157 486565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01157 840 ProSiteProfiles PB1 domain profile. 724 808 IPR000270 GO:0005515
Cpe19g01157 840 PANTHER AUXIN RESPONSE FACTOR 6 29 184 - -
Cpe19g01157 840 PANTHER AUXIN RESPONSE FACTOR 6 185 815 - -
Cpe19g01157 840 Gene3D - 722 813 - -
Cpe19g01157 840 Gene3D - 153 209 IPR015300 -
Cpe19g01157 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 29 184 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe19g01157 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 185 815 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cpe19g01157 840 SUPERFAMILY CAD & PB1 domains 726 799 - -
Cpe19g01157 840 SUPERFAMILY DNA-binding pseudobarrel domain 140 229 IPR015300 -
Cpe19g01157 840 Pfam AUX/IAA family 723 809 IPR033389 -
Cpe19g01157 840 MobiDBLite consensus disorder prediction 498 523 - -
Cpe19g01157 840 Gene3D - 265 337 - -
Cpe19g01157 840 Pfam Auxin response factor 227 310 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00742 Cpe19g01157 CCT
Cpe19g01157 Cpe20g00545 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe19g01157 Cpe-Chr19:7752738 Cpe20g00545 Cpe-Chr20:3182872 0 dispersed
Cpe10g00065 Cpe-Chr10:472288 Cpe19g01157 Cpe-Chr19:7752738 0 wgd
Cpe19g01157 Cpe-Chr19:7752738 Cpe20g00544 Cpe-Chr20:3180981 4.39E-72 wgd
Cpe19g01157 Cpe-Chr19:7752738 Cpe09g00742 Cpe-Chr9:6895319 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01157 - - csv:101210406 1220.68