Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01171 ATGGCGCTTGTAATGCACAAAGACTCATCAAACCAACAGATGGATACAAGCAAATACGTACGGTATACACCTGAACAAGTTGAGGCATTAGAGAGAGTCTATGCAGAATGTCCAAAGCCCAGTTCTCTTAGAAGGCAGCAGCTCATTAGAGAGTGCCCAATCCTTTCTAATATTGAGCCCAAACAGATCAAAGTTTGGTTTCAAAACCGCAGATGCCGGGAGAAGCAGAGGAAGGAATCTTCTCGCCTCCAGAGCGTAAACCGAAAGTTGTCTGCGATGAACAAGTTATTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCCCATTTAGTGTATGAGAATGGATTTATGCGCCAGCAACTGCATAGTCTCTTCTTTTCTGATGAACAGACATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCCCAACAACAGCAAAACCCAAATCCTCAGCATTCTAATAGGGATGCAAACAACCCAGCTGGTCTTCTTGCAATAGCCGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAACTGCAGTGGGGTAGCAGCGCGAGCCTGTGGTCTTGTTAGTCTAGAGCCAATGAAGGTTGCCGAAATTCTCAAAGATCGCCTTTCATGGTATCGTGACTGTCGCTGTCTTAATGTTTTAAGTGTAATCCCTACTGGAAATGGGGGAACAATAGAGCTCATATATATGCAGACTTACGCTCCAACGACATTAGCAGCTGCACGTGACTTCTGGACCATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTCTGTGAAAGGTCATTAACTACTTCAAGTGGTGGTCCAGCAGGGCCTCCGCCATCTACTTTTGTGAGAGCTGAAATGCTTCCTAGTGGTTATCTAATACGAGCATGCGAGGGTGGTGGATCTATTATTCACATTGTTGACCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGACCGCTTTATGAGTCATCCAAGATCCTTGCTCAGAAAATGACGATCGCTGCATTGCGTCACATTAGACAAATTGCACAAGAGACTAGTGGAGAGATCCAATATAGTGGGGGACGTCAACCAGCTGTATTACGAACGTTCGGTCAGAAACTCTGCAGGGGTTTCAACGACGCTGTTAATGGGTTTGCGGATGATGGTTGGTCAGCTATGAGCAGCGATGGTTTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTACCTGGGTCACAGTATAAAACGTCTATGTATCCCTCTTTTGGTGGAGTGATGTGTGCAAAAGCATCAATGTTGCTTCAGAATGTTCCCCCTGCTTTGCTTATTCGTTTCTTGAGGGAGCATCGATCTGAATGGGCTGATTATGGAGTTGATGCCTACTCTGCCGCGAGTTTAAAAGCCAGTCCATATGCTGTTCCATGCGCAAGGCCAGGTGGTTTCCCTAGCAGCCAGGTTATTTTGCCTCTTGCTCACACTGTCGAGCACGAAGAGTTTCTGGAGGTGGTTCGGCTGGAGGGCCTTGCATTCTCCCCTGAAGATGTTGCTTTGGCTGGACGAGATATGTACTTATTGCAGCTCTGTAATGGAGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCGCCTATAGATGAATCTTTTGCCGATGATGCTCCATTACTTCCTTCTGGTTTTCGTGTCATACCCCTGGATCCAAAAACGGCATCTGCTGTGTTCACCTTTGCCAACCAGGCCGGTCTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTCGACAAAATTCTCGACGAAGCGGGTCGGAAGATCCTCTGTTCTGAATTCCCCAAAATAATGCAGCAGGGATTCACAAATCTGCCATCTGGCATTTGCGTATCGAGTATGGGTCGACCTATTTCTTACGAGCAAGGCGTTGCCTGGAAGGTTCTAAATGATGATGATTCCAATCACTGTCTGGCTTTCATGTTCATAAACTGGTCTTTTGTGTGA 2124 46.61 MALVMHKDSSNQQMDTSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGFMRQQLHSLFFSDEQTSGTTTDNSCESVVMSGQPQQQQNPNPQHSNRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPMKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLTTSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETSGEIQYSGGRQPAVLRTFGQKLCRGFNDAVNGFADDGWSAMSSDGLEDVTIVINSSANKLPGSQYKTSMYPSFGGVMCAKASMLLQNVPPALLIRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAHTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCNGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFTNLPSGICVSSMGRPISYEQGVAWKVLNDDDSNHCLAFMFINWSFV 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7886271 7891338 - Cp4.1LG19g05650.1 Cpe19g01171 486579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01171 707 CDD homeodomain 18 78 IPR001356 GO:0003677
Cpe19g01171 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 611 IPR044830 GO:0003700
Cpe19g01171 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 611 - -
Cpe19g01171 707 SMART START_1 173 383 IPR002913 GO:0008289
Cpe19g01171 707 Coils Coil 83 107 - -
Cpe19g01171 707 ProSiteProfiles START domain profile. 164 392 IPR002913 GO:0008289
Cpe19g01171 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 610 707 - -
Cpe19g01171 707 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Cpe19g01171 707 CDD bZIP 70 109 - -
Cpe19g01171 707 MobiDBLite consensus disorder prediction 129 166 - -
Cpe19g01171 707 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Cpe19g01171 707 Gene3D - 9 85 - -
Cpe19g01171 707 SMART HOX_1 15 81 IPR001356 GO:0003677
Cpe19g01171 707 CDD START_ArGLABRA2_like 168 384 - -
Cpe19g01171 707 Gene3D - 207 391 IPR023393 -
Cpe19g01171 707 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Cpe19g01171 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 610 707 IPR044830 GO:0003700
Cpe19g01171 707 Pfam START domain 174 381 IPR002913 GO:0008289
Cpe19g01171 707 Pfam MEKHLA domain 610 706 IPR013978 -
Cpe19g01171 707 SUPERFAMILY Bet v1-like 174 385 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00053 Cpe19g01171 CCT
Cpe19g01171 Cpe20g00561 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00818 Cpe-Chr5:5072409 Cpe19g01171 Cpe-Chr19:7886271 0 dispersed
Cpe16g00533 Cpe-Chr16:6249568 Cpe19g01171 Cpe-Chr19:7886271 0 dispersed
Cpe17g00535 Cpe-Chr17:4476077 Cpe19g01171 Cpe-Chr19:7886271 1.40E-16 dispersed
Cpe10g00053 Cpe-Chr10:353954 Cpe19g01171 Cpe-Chr19:7886271 0 wgd
Cpe19g01171 Cpe-Chr19:7886271 Cpe20g00561 Cpe-Chr20:3318745 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51068 PF01852 START 2.30E-49 CL0209 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01171 K09338 - csv:101210154 1126.69