Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01172 ATGACTTCTTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATAAGCTGCAAAAGTACTCTGAATCTCAGAATCATTCTTCATCAGTCATTAATGGACTAAATCAACCCGGCATCACAGCCTCAAATCAGTATTTAACACCTCTACAAGTTGGAGCAGAACATGCTTTGGCACCCCCTGCTTATCCATATCCAGATCCTTATTTTAGAAGCATCTTTTCTCCTTATGATGCTCAACCGTATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTGCAGTTGATGGGAATTCAGCAAGCTGGTGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTGCGACGTAGACAGTCCCGTGCAAAGGCTGAATCAGAAAATAAAGCTCTGAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCGTTGAGGAGAGCTAGGGGTTGTGGTGGACGGTTTCTCAAATCAAATAAAAATGAGAATCAACAAAATGAAGTGGCGTCAGGTGATAAATCACATCCCAATATAAATCTTAATTCTGATAGAAGTGATCTAGCTTCTTCAGAGAACTGA 618 42.39 MTSSVHDYSDNGEADKLQKYSESQNHSSSVINGLNQPGITASNQYLTPLQVGAEHALAPPAYPYPDPYFRSIFSPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQNEVASGDKSHPNINLNSDRSDLASSEN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7895436 7898365 - Cp4.1LG19g05640.1 Cpe19g01172 486580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01172 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 187 IPR001289 GO:0003700|GO:0006355
Cpe19g01172 205 SMART cbf3 110 171 IPR001289 GO:0003700|GO:0006355
Cpe19g01172 205 MobiDBLite consensus disorder prediction 1 35 - -
Cpe19g01172 205 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700|GO:0006355
Cpe19g01172 205 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700|GO:0006355
Cpe19g01172 205 MobiDBLite consensus disorder prediction 162 205 - -
Cpe19g01172 205 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 187 - -
Cpe19g01172 205 MobiDBLite consensus disorder prediction 21 35 - -
Cpe19g01172 205 Gene3D - 111 172 - -
Cpe19g01172 205 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677|GO:0016602
Cpe19g01172 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700|GO:0006355
Cpe19g01172 205 MobiDBLite consensus disorder prediction 170 205 - -
Cpe19g01172 205 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe12g00827 Cpe-Chr12:7365749 Cpe19g01172 Cpe-Chr19:7895436 4.48E-35 dispersed
Cpe16g00877 Cpe-Chr16:8298473 Cpe19g01172 Cpe-Chr19:7895436 3.58E-32 dispersed
Cpe17g00690 Cpe-Chr17:5519163 Cpe19g01172 Cpe-Chr19:7895436 8.10E-34 dispersed
Cpe18g00169 Cpe-Chr18:3291582 Cpe19g01172 Cpe-Chr19:7895436 3.21E-32 dispersed
Cpe10g00052 Cpe-Chr10:342802 Cpe19g01172 Cpe-Chr19:7895436 5.91E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51069 PF02045 CBFB_NFYA 4.20E-26 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01172 K08064 - csv:101205549 351.673