Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01173 ATGGAACTTGGAAGGCCTGGCTCAGGTGGCAAAAGAAGATTAAGGGACCTATTGCTTCAAAAGGATAATCGCTTCTGTGCAGATTGTCGAGCTTTAGATCCTAGATGGGCGTCATCAAATATTGGAGTTTTTATATGCTTGAAATGCTGTGGTGTTCACAGAAGCCTTGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGATGCCATGATAGAAATTGGAGGGAATAATTCAGCGAATGCGATTTATGAAGCCTTTATTCCTGAGGGATATTCAAAGCCTGGACCGGATGCCACCCATGAACAACGTTCAAAATTCATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCGAACTCCGACAAAAACAATGTCCAAGCAAACTTTGCTTCAAAGGTCATGAACAGTTTTCGTTCAAATTCTTCACAAAAATCAAAGGGTATGGTAGAGTTTCTTGGATTATTGAAGGTGAAAGTGATTAAAGGGACAAACTTAGCTATCAGGGATATGATGTCGAGCGATCCTTATGTAGTCTTGACTCTTGGCCAACAGACTGTCCAGACAGGTATAATCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGATGCTATCTGTACCTCAATCTTTTGGAACCTTAAAGTTGCAAGTATACGACTATGACACGTTTACAGCAGACGACATAATGGGAGAAGCAGAAATTGATCTCCAGCCCTTGATAACATCAGCAATGGCATTTGGGGATGCTGGAATGTTTTCTAACATGCAAATTGGAAAATGGCTGAAATCACACGATAATGCTCTCATAGGCGATAGCACCGTTAATATTGTGGATGGGAAGGTAAAGCAAGAGATATCACTCCAGCTGCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTAGAATGGATGCCTCTTGGACAATAG 978 40.8 MELGRPGSGGKRRLRDLLLQKDNRFCADCRALDPRWASSNIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEIGGNNSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSNSDKNNVQANFASKVMNSFRSNSSQKSKGMVEFLGLLKVKVIKGTNLAIRDMMSSDPYVVLTLGQQTVQTGIIRSNLNPVWNEELMLSVPQSFGTLKLQVYDYDTFTADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIGDSTVNIVDGKVKQEISLQLQNVESGELDLELEWMPLGQ 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7898767 7902404 + Cp4.1LG19g05700.1 Cpe19g01173 486581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01173 325 Pfam C2 domain 169 259 IPR000008 -
Cpe19g01173 325 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Cpe19g01173 325 PRINTS HIV Rev interacting protein signature 63 84 IPR001164 GO:0005096
Cpe19g01173 325 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Cpe19g01173 325 SMART C2_3c 170 265 IPR000008 -
Cpe19g01173 325 Pfam Putative GTPase activating protein for Arf 12 127 IPR001164 GO:0005096
Cpe19g01173 325 CDD ArfGap 14 120 - -
Cpe19g01173 325 CDD C2_ArfGAP 168 312 - -
Cpe19g01173 325 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 4 324 IPR044518 GO:0005096|GO:0005543
Cpe19g01173 325 ProSiteProfiles C2 domain profile. 154 266 IPR000008 -
Cpe19g01173 325 PRINTS C2 domain signature 209 222 IPR000008 -
Cpe19g01173 325 PRINTS C2 domain signature 185 197 IPR000008 -
Cpe19g01173 325 PRINTS C2 domain signature 230 238 IPR000008 -
Cpe19g01173 325 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 4 324 - -
Cpe19g01173 325 SMART arf_gap_3 11 133 IPR001164 GO:0005096
Cpe19g01173 325 Gene3D C2 domain 168 325 IPR035892 -
Cpe19g01173 325 SUPERFAMILY ArfGap/RecO-like zinc finger 11 128 IPR037278 -
Cpe19g01173 325 Gene3D Arf GTPase activating protein 6 132 IPR038508 -
Cpe19g01173 325 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 139 IPR001164 GO:0005096
Cpe19g01173 325 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 169 313 IPR035892 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00050 Cpe19g01173 CCT
Cpe09g00726 Cpe19g01173 CCT
Cpe19g01173 Cpe20g00562 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01923 Cpe-Chr1:16392230 Cpe19g01173 Cpe-Chr19:7898767 5.48E-117 dispersed
Cpe04g01368 Cpe-Chr4:11123228 Cpe19g01173 Cpe-Chr19:7898767 2.26E-40 dispersed
Cpe09g01097 Cpe-Chr9:9472194 Cpe19g01173 Cpe-Chr19:7898767 1.23E-27 dispersed
Cpe13g00490 Cpe-Chr13:5053254 Cpe19g01173 Cpe-Chr19:7898767 5.67E-122 dispersed
Cpe18g00677 Cpe-Chr18:6805030 Cpe19g01173 Cpe-Chr19:7898767 3.21E-43 dispersed
Cpe20g00174 Cpe-Chr20:992807 Cpe19g01173 Cpe-Chr19:7898767 3.65E-27 dispersed
Cpe10g00050 Cpe-Chr10:333098 Cpe19g01173 Cpe-Chr19:7898767 0 wgd
Cpe19g01173 Cpe-Chr19:7898767 Cpe20g00562 Cpe-Chr20:3336764 0 wgd
Cpe19g01173 Cpe-Chr19:7898767 Cpe09g00726 Cpe-Chr9:6673279 8.15E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01173 K12486 - csv:101218116 574.704