Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g01196 ATGGGGAAGAAGAAGAAGAGGGTTTCGTCTAAGGTATGGTGCTACTATTGCGACAGGGAATTCGACGACGAGAAGATTTTGGTGCAGCATCAGAAGGCCAAGCACTTTAAGTGCCATGTCTGCCATAAGAAGCTTTCTACTGCTGGTGGTATGGTCATCCACGTTCTTCAGGTCCACAAAGAGTCAGTCACCAAAGTTCCTAATGCAAAGGCTGGCAGAGAATCAACAGATATTGAAATATATGGAATGCAAGGAATTCCACCTGATGTCTTGGCAGCACACTACGGAGAGGAGGATGAAGAGTCTGCATCGAAGGTGGCCAAAGTGGAGATGCCACCAACTCAGATGGTTGGTGGTATGGTGCCTGGATCGCTAGGTATTATGTACCCTCCTCAACCAGGTTTAGCTGCAATGCGACCTATTTATGCTTCAACTGGACAAGCGCAGCCTACTGCCTGGCAAGTTCCACCTCGTCCCCAACCTTGGTTTCCCCCAAATTCAGCCGTTTCAATTCCCCCTCCTGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACTGCAAGGCCCCCACTTCCAGTATCTTCAACTCCTATGCTCCAGCCTCCACAAATAACGCCTCCTGGATTGCCTTCAACTACACCTTCAGTTTCGGTATCTCAACCGTTGTTCCCTGTTGTTAGTAATAGCCACGGATCTACCCAAAGCTCTCCTTTTCCTTCATCTTCACTTCCAACAAGCATTCCTTTGACATCTGCAGCAGAAATCAAGGGCTCATTGAGTATACATTTGGGTACTAACTCCTTTTCCACTATTTGCAATCAAGTTCCAATCATTCCAGGTGGAGTATTGAGCAATTCACACTCTTATGCCTCGGGACCAAATACAGGCGGTCCTTCCATTGGACCTCCTCCTGTCATTGCGAATAAAGCTCCTATTCAGCCATCAACAAATGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGATGAGTTCAATTGATGCAGCCATAGACAAACGAATCTTGGAAAGCAGGCTTGCTGGTCGAATGCCATTTTAG 1125 46.93 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKAGRESTDIEIYGMQGIPPDVLAAHYGEEDEESASKVAKVEMPPTQMVGGMVPGSLGIMYPPQPGLAAMRPIYASTGQAQPTAWQVPPRPQPWFPPNSAVSIPPPAPLGYAQQPLFPVQTARPPLPVSSTPMLQPPQITPPGLPSTTPSVSVSQPLFPVVSNSHGSTQSSPFPSSSLPTSIPLTSAAEIKGSLSIHLGTNSFSTICNQVPIIPGGVLSNSHSYASGPNTGGPSIGPPPVIANKAPIQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQMSSIDAAIDKRILESRLAGRMPF 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8034558 8040804 - Cp4.1LG19g05500.1 Cpe19g01196 486604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g01196 374 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Cpe19g01196 374 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cpe19g01196 374 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cpe19g01196 374 Gene3D Classic Zinc Finger 1 66 - -
Cpe19g01196 374 SMART c2h2final6 12 35 IPR013087 -
Cpe19g01196 374 SMART c2h2final6 36 59 IPR013087 -
Cpe19g01196 374 PANTHER ZINC FINGER PROTEIN 207 1 374 - -
Cpe19g01196 374 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00027 Cpe-Chr10:177785 Cpe19g01196 Cpe-Chr19:8034558 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51072 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g01196 - - csv:101206973 648.662