Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe19g01218 | ATGGAGAGCCATGGAGCTGGTAGTTATTTCGTGGATGAGAAGTCTGTTCTTGTCGAAAACATTTTCTTCGACTTCCTCAAGAGTTTTCGCCTCGTTGGGAACTCTGGAGACCCTTACTACGAGACAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTCATTGATTTCGCTCACCTTATGCGCTCCAATGATCTTCTCCACGTAGCAATCGCCGACGAATATCTCAGGTTTGAACCATACCTCAAGAACGCTTGCAAGCGATTCGTAATGGAGCATAATCCTTCTTTCATCGCTGACGATAACCCCTTCAAGGACATAAATGTCGCTTTCTTCAACATTCCCGTTTCTAAAAGGTTGAGAGAATTGACCACTGCAGAAATTGGGAAATTAGTATCCGTGACAGGAGTGGTGACGCGGACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGGAATGTTATTAAGAACGTCGAACAACAATTTAAGTACACGGAGCCAACAATATGCATGAACCCAACCTGTTCGAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTTGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCGGCTGGCTCTCTTCCACGATCTTTGGATGTAATTCTCCGCCATGAAATGGTCGAACGTGCTAGGGCTGGAGACACGGTCATCTTCACGGGTACAGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGGGAAGCTTCAGAGCGAAAAAATTCTGCGGTTGGACATGAAGGAATGAGGGGTCTACGAGCCCTAGGAGTGAGGGACCTGTCCTACCGCCTAGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGCAGAAGGGATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAGTTCACCACTGAAGAGCTTGATGAAGTTCAAAGAATGAGGAATACCCCTGACTTCTTCAACAGACTTATTGATAGCATTGCACCAGCAGTCTTTGGCCATCAAGATATCAAGCGAGCAATTCTGCTAATGCTGTTAGGCGGTGTCCACAAGTTAACCCATGAAGGAATTAACCTTCGAGGTGATATCAATGTCTGTATAGTAGGAGATCCAAGTTGTGCAAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAATCTTCTTCTGCTGCTGGATTAACTGCAACTGTAGCCAAAGAGCCAGAAACAGGAGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCGGACAATGGCATTTGCTGTATTGATGAATTCGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATAACGAAAGCCGGAATACAGGCAACACTAAATGCCAGGACGTCAATCCTTGCTGCTGCTAATCCTACAGGAGGGCGCTATGACAAATCTAAACCACTAAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCACATTGCACACCACATTGTGAGAGTACACCAGAAGCATGAAGACGCTCTTTCTCCTGCATTTACCACTGCTGAGTTGAAGCGTTATATTGCATATGCAAAAACTCTAAAACCTAAGTTAAGTTTAGAAGCCAGAAAAGTATTGGTGGACTCTTATGTTGCTCTTCGCAGAGGAGATACAACTCCTGGAAGTAGGGTTGCTTATCGCATGACAGTTAGGCAGCTCGAGGCATTAATAAGGCTGTCCGAAGCAATTGCACGAAGTTATTTGGAGACTTTGCTACCTTGCAGTGTGGAATCTAGCGAGATTGACCTATCTGAATTTCAAGAAGAAACTAATGGAGGTGGAGATGGTGATAATAATGTAGACAATAGGCCTCATGAGGTTGATGCTGAACCTAGGAATGGTGCAACAGAGCCAACTTCGGGAAATGGTGGTTCTGGCAGTCAACATGAGAAGAAGAAACTTCTCCTGAGTGATGAATATTTTCAGAGGGTTACCCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAATCTGTGATGCAAGAAGGAACTGAGCTGGCGGGAATGAGGCAGAGAGATCTGATTCAATGGTATGTGGCTCAGCAGAACGAGAAGAATAGCTATAGCTCCATGGAGGAGGCAAAAAAAGAAGTTAAAACAATTAGAAGTATTATTGAGAGTTTGATAGTAAGGGAAGGCCATTTGATAGTTGTAGATGACGGGAGGCCAGTAGATGGCGGGGTTGAAGGCGAACCATCGTTAATTAAGGATAACAGGATTTTAGCTGTGGCTCCCAATTATGTCGTTGATTGA | 2457 | 44.44 | MESHGAGSYFVDEKSVLVENIFFDFLKSFRLVGNSGDPYYETEIEAMMAGESNTMFIDFAHLMRSNDLLHVAIADEYLRFEPYLKNACKRFVMEHNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERKNSAVGHEGMRGLRALGVRDLSYRLAFIANSVQVLDGRRDFDIRNRKKDADEDNQQFTTEELDEVQRMRNTPDFFNRLIDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVALRRGDTTPGSRVAYRMTVRQLEALIRLSEAIARSYLETLLPCSVESSEIDLSEFQEETNGGGDGDNNVDNRPHEVDAEPRNGATEPTSGNGGSGSQHEKKKLLLSDEYFQRVTQALVMRLRQHEESVMQEGTELAGMRQRDLIQWYVAQQNEKNSYSSMEEAKKEVKTIRSIIESLIVREGHLIVVDDGRPVDGGVEGEPSLIKDNRILAVAPNYVVD | 818 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 8191358 | 8198070 | + | Cp4.1LG19g05300.1 | Cpe19g01218 | 486626 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe19g01218 | 818 | MobiDBLite | consensus disorder prediction | 655 | 698 | - | - | |
| Cpe19g01218 | 818 | Pfam | MCM P-loop domain | 334 | 556 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01218 | 818 | Gene3D | - | 10 | 118 | - | - | |
| Cpe19g01218 | 818 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 356 | 633 | IPR027417 | - | |
| Cpe19g01218 | 818 | Gene3D | - | 122 | 250 | IPR012340 | - | |
| Cpe19g01218 | 818 | CDD | MCM6 | 349 | 645 | - | - | |
| Cpe19g01218 | 818 | Pfam | MCM6 C-terminal winged-helix domain | 701 | 817 | IPR041024 | - | |
| Cpe19g01218 | 818 | Gene3D | - | 324 | 643 | IPR027417 | - | |
| Cpe19g01218 | 818 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 12 | 770 | - | - | |
| Cpe19g01218 | 818 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 475 | 488 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01218 | 818 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 387 | 402 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01218 | 818 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 447 | 461 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01218 | 818 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 526 | 534 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01218 | 818 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 499 | 511 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01218 | 818 | SMART | mcm | 118 | 659 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01218 | 818 | Pfam | MCM AAA-lid domain | 571 | 637 | IPR041562 | - | |
| Cpe19g01218 | 818 | ProSitePatterns | MCM family signature. | 455 | 463 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Cpe19g01218 | 818 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 77 | 89 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cpe19g01218 | 818 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 119 | 131 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cpe19g01218 | 818 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 169 | 186 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cpe19g01218 | 818 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 222 | 233 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cpe19g01218 | 818 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 281 | 302 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Cpe19g01218 | 818 | Coils | Coil | 759 | 779 | - | - | |
| Cpe19g01218 | 818 | Gene3D | - | 697 | 818 | - | - | |
| Cpe19g01218 | 818 | SUPERFAMILY | Nucleic acid-binding proteins | 22 | 252 | IPR012340 | - | |
| Cpe19g01218 | 818 | Pfam | MCM OB domain | 122 | 250 | IPR033762 | - | |
| Cpe19g01218 | 818 | ProSiteProfiles | MCM family domain profile. | 346 | 552 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cpe19g01218 | 818 | Pfam | MCM N-terminal domain | 21 | 115 | IPR027925 | - | |
| Cpe19g01218 | 818 | Gene3D | - | 149 | 200 | - | - | |
| Cpe19g01218 | 818 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 12 | 770 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe15g00364 | Cpe-Chr15:4833021 | Cpe19g01218 | Cpe-Chr19:8191358 | 1.50E-71 | dispersed | |
| Cpe17g00747 | Cpe-Chr17:5904660 | Cpe19g01218 | Cpe-Chr19:8191358 | 3.35E-110 | dispersed | |
| Cpe19g01129 | Cpe-Chr19:7595726 | Cpe19g01218 | Cpe-Chr19:8191358 | 3.37E-89 | dispersed | |
| Cpe19g01218 | Cpe-Chr19:8191358 | Cpe15g00556 | Cpe-Chr15:6397771 | 6.74E-116 | transposed | |
| Cpe19g01218 | Cpe-Chr19:8191358 | Cpe04g00111 | Cpe-Chr4:991728 | 4.97E-116 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe19g01218 | K02542 | - | csv:101219775 | 1456.81 |