Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00005 ATGATAGCCAATACACCCGCCTCGGCCTCCCTCTCTCTTCCTTCTTCGGAGCCTTACTCGTGCTTAGAAAATGGAAGCAGCAACAGCAACAAGAGGAAAAGAAGGCCTGCGGGCACCCCAGATCCTGATGCAGAGGTGGTGTCTCTCTCCCCCAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTACAGATGCACAGACGGCGGCATAAGGTGCCTTGGAAGCTGTTGAAGAGGGAGACTCCTGTTGTGCGGAAAAGGGTTTTCGTTTGCCCGGAGCCCAGCTGTCTGCACCACGACCCTTGCCACGCCCTCGGCGATCTGGTTGGCATCAAGAAGCACTTCCGAAGAAAGCACAGCAACCACAAGCAGTGGGTTTGTGAAAAGTGCTCCAAGGCCTACGCCGTTCAGTCTGATTACAAGGCCCATCTCAAAACCTGTGGCACCCGTGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCTAGGGTGGAGAGCTTTATAGAGCACCAAGATGCTTGCAATATGGGGCATCTCCGCCAAGAATCCCAAACCCTCCACCCCGCGTGTTTGTCCCGAACGGCTTCCAGTCCAAGCCCACCCAGCGACGCTAACTTCACGGCGCCACCCACTGCCATCTTCTTAGCCCCCACCGACGACTCCATCATCAACAACAACAACAACAACAATAATAATAGCCATCACAATCTAGACCTCAAACTCTCAACTTCTACATCAAATGAAGGTTCTTCCACGCAACTACAGCTTTCGATCGGGTCGTGTGATTTTGGGGACAAGAAGAAAAGGGTGCAGTTGTTGGATGATGAGAAAGGTGGGGGCCGGGGGCCGGGGGGTGTTAGAGAAGAAGCGCGGGAAGAGCTAAGAGAGGCAATGGCGGAGAAGGCGTACGCGGAGGAGGCAAGGCAACAGGCGAAGCGGCAGATAGAAATGGCAGAGGAAGAATTCGTGAACGCAAAGAGGATGAGGCAACAGGCACAGGCGGAGTTAGATAAGGCTACAGCTCTTAAACAAGCGGCAATAAAACAGATAAACTCAACCCTTCTTGAGATCACTTGTCAAGCATGCCAGAAGCAATTTCAAGCCAAGCCCACAACAACAACTACTACTACTGCACCCGCTGACCATGACACTTCCGTAGCATTCAGTTACGTATCCTCAGTCATTACAACCGAAGTGAATAAATATGCAGAAAGAGTGCTGTGA 1257 52.59 MIANTPASASLSLPSSEPYSCLENGSSNSNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTLHPACLSRTASSPSPPSDANFTAPPTAIFLAPTDDSIINNNNNNNNNSHHNLDLKLSTSTSNEGSSTQLQLSIGSCDFGDKKKRVQLLDDEKGGGRGPGGVREEAREELREAMAEKAYAEEARQQAKRQIEMAEEEFVNAKRMRQQAQAELDKATALKQAAIKQINSTLLEITCQACQKQFQAKPTTTTTTTAPADHDTSVAFSYVSSVITTEVNKYAERVL 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 40531 43233 - Cp4.1LG20g00080.1 Cpe20g00005 486634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00005 418 MobiDBLite consensus disorder prediction 1 47 - -
Cpe20g00005 418 Gene3D Classic Zinc Finger 47 133 - -
Cpe20g00005 418 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Cpe20g00005 418 Coils Coil 298 360 - -
Cpe20g00005 418 SMART c2h2final6 60 82 IPR013087 -
Cpe20g00005 418 SMART c2h2final6 137 164 IPR013087 -
Cpe20g00005 418 SMART c2h2final6 101 131 IPR013087 -
Cpe20g00005 418 PANTHER OS03G0310200 PROTEIN 13 408 IPR039288 GO:0009630
Cpe20g00005 418 MobiDBLite consensus disorder prediction 235 263 - -
Cpe20g00005 418 MobiDBLite consensus disorder prediction 202 222 - -
Cpe20g00005 418 MobiDBLite consensus disorder prediction 1 27 - -
Cpe20g00005 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Cpe20g00005 418 SUPERFAMILY beta-beta-alpha zinc fingers 59 157 IPR036236 -
Cpe20g00005 418 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 13 408 - -
Cpe20g00005 418 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01101 Cpe-Chr9:9501073 Cpe20g00005 Cpe-Chr20:40531 1.08E-155 dispersed
Cpe13g00436 Cpe-Chr13:4697519 Cpe20g00005 Cpe-Chr20:40531 1.29E-139 dispersed
Cpe20g00005 Cpe-Chr20:40531 Cpe20g00169 Cpe-Chr20:959200 8.08E-167 dispersed
Cpe02g01099 Cpe-Chr2:10053745 Cpe20g00005 Cpe-Chr20:40531 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51079 PF00096 zf-C2H2 0.0039 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00005 K25871 - csv:101209426 610.142