Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe20g00010 ATGAAGAAGGGAATTGCGTTTTGTATAGGTCCTGCTTCATCGGTTATGGATTGCAAGGAGCTCAATTTGAACGAAGATTGTGGTGCCTGTGGTAGCGGGGTAAAAAATGGAGGAGATGCGTTTATAGACAGGAGCAAAGTGAGGATTTTGCTGTGCGATAATGATTCAAAAAGTTCAGAAGAGGTTTTCAAGCTTCTTTTGAAATGTTCCTACCAGGTCATTTCCGTGAGCTCAGCTAGACAGGTCATCGATGCTTTGAATGCGGAGGGACCTGAAATTGATATTATACTCTCAGAAGTTGACCTGCCGATGGCCAAAGGTATGAAAATGTTGAAGTATATCACCCGGGATAAAGAGCTCCGGCGCATTCCTGTTATCATGATGTCAACACAAGATGAAGTCCCTATTGTCGTTAAGTGCTTGAGGCTTGGAGCAGCCGACTATCTTGTAAAGCCTTTACGGACAAATGAGCTATTAAACTTGTGGACGCATATGTGGAGAAGAAGACGCATGGTTTGCCTCTATTTTCGAACATTTCTTGGACTGGCAGAAAAAAACATTTTGAACTATGAATTTGATTTGGTGGCATCAGACCCAAGTGATGCCAACACAAATAGTACTACTTTGTTCTCGGATGACACTGATGACAAGTCACGTAGGAGCACAAATCCAGAGATGGGAGTTGCAACACTCCAGGAAGATGAGTCTGGTATTGCTGCCGCACTGGTAGAACCTCCTGCTGTTCATACAGTGGAACATCAGCCAGATGTACCTGGAATTAGCGAGCGCCGAATAGGCCAACCATCTTCATGCCCCAGAAAGAGTGAACTAAAGATTGGGGAATCATCCGCATTCTTTACGTATGTCAAATCAAGAAGTGTGAAGAATAAGGCAGTAGACGTTGAGGACAATGGCAAACGACTTTGGCTGGATGAAAATCATCAAGAAAAAACTGGTCAGCCTGTAGTTCGTCTTCCCCCCATACCAGAAAGTGTGGAGGCCTTGGAAAGCCATTCACAAGGAGACGAAATCCCAAGTAGTACTAGTTTTCCTGATTCTTTTTCTGTGGAGAGATCTTGTACGCCACCTGCTGGCTCAGGAGTTCACAAGGAAAGAAGCTTCAATGAAGAAAATTGCTCTCAAGTGCATGTGCAACCGCCAAATGGATCTCAACTTGATATTTCAGGCCTACCTGTGCAAACACAAACTGCTTATCCCTTCTATACGCCAGAAGGTATGATGTCGGCGCAACTGTACCAAAAGAACTTGCACGATATGCATAATCATGCGGCAATGATGTCACAGTACGGTCATTTTCATCATTGCCCTCCCAATGTAAGTGGGGTGGCATCTTATCCTTATTACCCCATGAATATATGTTTACAACCTGGTCAAATGCCCGCTACTAATAATACTCATTCATGGCCATCTTTTGGAAATTCATCTTCCAATGAAGCGAAATCGAACAAATTTGATAGAAGAGAGGCAGCACTGATTAAATTTAGGCAGAAAAGGAAAGAGCGGTGTTTTGATAAGAAGATTAGGTATGTTAATAGGAAGCGACTTGCAGAAAGGAGGCCCCGTGTGCGGGGTCAGTTTGTGAGAAAGGTAAATGGTGTCAATGTAGATCTTAATGGACAACCTGCATCTGCTGATGATGTCGAGGATGAAGACGAGGAGGAGCAACTATCGAGGGATTCCTCTCATGAGGATGATGGTTTAGGATATTAG 1731 43.73 MKKGIAFCIGPASSVMDCKELNLNEDCGACGSGVKNGGDAFIDRSKVRILLCDNDSKSSEEVFKLLLKCSYQVISVSSARQVIDALNAEGPEIDIILSEVDLPMAKGMKMLKYITRDKELRRIPVIMMSTQDEVPIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMVCLYFRTFLGLAEKNILNYEFDLVASDPSDANTNSTTLFSDDTDDKSRRSTNPEMGVATLQEDESGIAAALVEPPAVHTVEHQPDVPGISERRIGQPSSCPRKSELKIGESSAFFTYVKSRSVKNKAVDVEDNGKRLWLDENHQEKTGQPVVRLPPIPESVEALESHSQGDEIPSSTSFPDSFSVERSCTPPAGSGVHKERSFNEENCSQVHVQPPNGSQLDISGLPVQTQTAYPFYTPEGMMSAQLYQKNLHDMHNHAAMMSQYGHFHHCPPNVSGVASYPYYPMNICLQPGQMPATNNTHSWPSFGNSSSNEAKSNKFDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASADDVEDEDEEEQLSRDSSHEDDGLGY 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 65704 69904 - Cp4.1LG20g00330.1 Cpe20g00010 486639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe20g00010 576 Pfam Response regulator receiver domain 49 160 IPR001789 GO:0000160
Cpe20g00010 576 MobiDBLite consensus disorder prediction 340 360 - -
Cpe20g00010 576 SMART REC_2 47 162 IPR001789 GO:0000160
Cpe20g00010 576 MobiDBLite consensus disorder prediction 550 565 - -
Cpe20g00010 576 MobiDBLite consensus disorder prediction 251 275 - -
Cpe20g00010 576 ProSiteProfiles CCT domain profile. 494 536 IPR010402 GO:0005515
Cpe20g00010 576 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 553 IPR045279 GO:0009736
Cpe20g00010 576 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR1 19 553 - -
Cpe20g00010 576 MobiDBLite consensus disorder prediction 333 373 - -
Cpe20g00010 576 Pfam CCT motif 494 536 IPR010402 GO:0005515
Cpe20g00010 576 Gene3D - 47 254 - -
Cpe20g00010 576 MobiDBLite consensus disorder prediction 540 576 - -
Cpe20g00010 576 SUPERFAMILY CheY-like 45 172 IPR011006 -
Cpe20g00010 576 ProSiteProfiles Response regulatory domain profile. 48 166 IPR001789 GO:0000160
Cpe20g00010 576 MobiDBLite consensus disorder prediction 203 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe20g00010 K12127 TOC1, APRR1; pseudo-response regulator 1 - csv:101220107 981.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01835 Cpe-Chr3:13677288 Cpe20g00010 Cpe-Chr20:65704 9.88E-14 dispersed
Cpe17g00409 Cpe-Chr17:3051029 Cpe20g00010 Cpe-Chr20:65704 8.12E-08 dispersed
Cpe19g00394 Cpe-Chr19:3519895 Cpe20g00010 Cpe-Chr20:65704 1.54E-17 dispersed
Cpe20g00010 Cpe-Chr20:65704 Cpe11g00049 Cpe-Chr11:251288 8.12E-20 dispersed
Cpe02g01049 Cpe-Chr2:9664362 Cpe20g00010 Cpe-Chr20:65704 0 wgd
Cpe20g00010 Cpe-Chr20:65704 Cpe04g01485 Cpe-Chr4:11795729 3.60E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g582 . . . . . . . . Cmo13g01203 . . . . . . Cpe20g00010 . . . . . . . . . . . . . . . Cone2ag0830 . . . . Csa01g00568 . . . . . . . . . . . . . . . Car13g00976 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51081 PF00072 Response_reg 8.70E-17 CL0304 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe20g00010 Cpe_Chr20 FPKM 35.256252 38.484241 12.321921 11.147861 22.853117 25.883598 24.742805 18.647068 20.654205 20.801464